Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   BS635_RS09220 Genome accession   NZ_CP018323
Coordinates   1772958..1773983 (-) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain KSC9     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767958..1778983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS635_RS09190 (BS635_09260) zapB 1768042..1768287 (+) 246 WP_001296623.1 septal ring assembly protein ZapB -
  BS635_RS09195 (BS635_09265) rraA 1768372..1768857 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  BS635_RS09200 (BS635_09270) menA 1768950..1769876 (-) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  BS635_RS09205 (BS635_09275) hslU 1769943..1771274 (-) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  BS635_RS09210 (BS635_09280) hslV 1771284..1771814 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  BS635_RS09215 (BS635_09285) ftsN 1771907..1772866 (-) 960 WP_000068834.1 cell division protein FtsN -
  BS635_RS09220 (BS635_09290) cytR 1772958..1773983 (-) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  BS635_RS09225 (BS635_09295) priA 1774139..1776337 (-) 2199 WP_042031300.1 primosomal protein N' Machinery gene
  BS635_RS09230 (BS635_09300) rpmE 1776540..1776752 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=174944 BS635_RS09220 WP_000644904.1 1772958..1773983(-) (cytR) [Escherichia coli strain KSC9]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=174944 BS635_RS09220 WP_000644904.1 1772958..1773983(-) (cytR) [Escherichia coli strain KSC9]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628