Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AYR60_RS04230 Genome accession   NZ_CP014872
Coordinates   858410..860209 (+) Length   599 a.a.
NCBI ID   WP_054646704.1    Uniprot ID   A0A0R2JW20
Organism   Fructilactobacillus lindneri strain TMW 1.1993     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 853410..865209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR60_RS04210 (AYR60_04210) - 855224..855730 (-) 507 WP_054646708.1 hypothetical protein -
  AYR60_RS04215 (AYR60_04215) - 855829..856569 (+) 741 WP_056997757.1 MBL fold metallo-hydrolase -
  AYR60_RS04220 (AYR60_04220) - 856591..857271 (+) 681 WP_054646707.1 adaptor protein MecA -
  AYR60_RS04225 (AYR60_04225) - 857322..858413 (+) 1092 WP_056997756.1 competence protein CoiA family protein -
  AYR60_RS04230 (AYR60_04230) pepF 858410..860209 (+) 1800 WP_054646704.1 oligoendopeptidase F Regulator
  AYR60_RS04235 (AYR60_04235) - 860252..860821 (-) 570 WP_054646703.1 DsbA family protein -
  AYR60_RS04240 (AYR60_04240) - 860978..861604 (+) 627 WP_054646702.1 GTP pyrophosphokinase family protein -
  AYR60_RS04245 (AYR60_04245) - 861604..862413 (+) 810 WP_054646701.1 NAD kinase -
  AYR60_RS04250 (AYR60_04250) - 862406..863290 (+) 885 WP_056997755.1 RluA family pseudouridine synthase -
  AYR60_RS04255 (AYR60_04255) - 863308..863562 (-) 255 WP_143444890.1 hypothetical protein -
  AYR60_RS04260 (AYR60_04260) - 863519..863887 (-) 369 WP_054646699.1 copper homeostasis protein CutC -
  AYR60_RS04265 (AYR60_04265) - 864019..864543 (+) 525 WP_054646698.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69076.81 Da        Isoelectric Point: 5.0022

>NTDB_id=174942 AYR60_RS04230 WP_054646704.1 858410..860209(+) (pepF) [Fructilactobacillus lindneri strain TMW 1.1993]
MSIENIPNRKDVPKNLTWDLTTIFKNHAEFEKEFKQVSAMLPQVSNLTGKLKMDSKSLLYVVQTVLRLNRMFEKLYVYAQ
LSNDIDTSNGSTQTDMDKVETLGTKVNKAQSWFDFEIIELGRQKIAQFIEEQPQLKQYERLFAVILKNEGHVLKPDEEKL
LSGAANIFASPEKIFGILDSSDFSFPTVPNEDGKIVKLSNGIYSSLLQSSDREVRKTAFQKFYTVFDQFQHTLAATLSTE
VSVNNYQAEVHHFDSAREMAMHENEIPTTVYDTLIKSVNQHLPLLHRYVALRKKILNLSEMHMYDMYVPLAQVPKTNFTF
NKGKQIVLDALETMGDDYLKHVQEEFDNRWIDVVENQGKRTGAYSSGMYDTNPYVLLNWQDNLDNIYTLIHETGHSMHSY
YSSHNQPYQYGDYSIFVAEIASTTNENILTDYLLENTADPEIKKYILSSYLEGFKGTIFRQTQFAEFENEIHQASQAGKA
LTADFMNEKYLKLNQKYYGNQIISDPEIKLEWSRIPHFYYDFYVYQYATGFAAASNLATNLTSGNERDLQNYLDYLKSGS
SKTPIEIMQLAGVDMMDSSYLDNAFAKFANRLDQLEDLL

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=174942 AYR60_RS04230 WP_054646704.1 858410..860209(+) (pepF) [Fructilactobacillus lindneri strain TMW 1.1993]
ATGAGTATTGAAAATATTCCCAATCGTAAAGATGTTCCAAAAAATTTAACCTGGGATCTTACTACTATTTTTAAGAACCA
TGCTGAATTTGAAAAAGAATTTAAACAAGTTAGCGCAATGCTTCCTCAGGTTAGTAATTTAACGGGGAAACTTAAAATGG
ACAGTAAATCTTTATTATACGTTGTGCAAACGGTTCTTAGATTAAATCGAATGTTTGAAAAATTGTATGTGTATGCTCAG
TTAAGTAATGATATTGATACTTCTAATGGAAGTACTCAGACTGATATGGATAAAGTTGAAACTTTAGGAACTAAAGTTAA
TAAGGCACAATCTTGGTTTGATTTTGAAATAATTGAATTAGGCAGGCAAAAGATTGCACAATTCATCGAAGAACAACCAC
AGTTAAAACAATATGAACGACTTTTTGCGGTTATTTTAAAAAATGAAGGACATGTGTTGAAACCTGACGAAGAAAAGTTA
TTATCGGGGGCTGCTAACATTTTTGCTTCACCAGAAAAGATTTTTGGAATTTTGGATAGTTCTGATTTTTCTTTTCCAAC
TGTTCCAAATGAAGACGGTAAAATCGTTAAGCTTTCCAATGGAATTTATAGTTCGTTATTACAATCTTCTGATCGGGAGG
TTCGTAAAACTGCCTTTCAAAAATTTTATACAGTCTTTGATCAATTTCAGCATACCCTTGCAGCTACTTTATCAACTGAA
GTTTCAGTTAATAATTATCAAGCAGAAGTTCATCATTTTGACTCTGCTCGTGAAATGGCAATGCACGAAAATGAAATTCC
AACTACTGTTTATGATACTTTAATAAAAAGTGTTAATCAGCATTTGCCATTATTACATCGATACGTTGCTTTGCGAAAGA
AAATTTTGAATTTATCTGAAATGCATATGTATGATATGTACGTACCACTAGCTCAAGTACCAAAAACCAATTTTACCTTT
AATAAAGGGAAGCAGATTGTTTTAGATGCTTTAGAGACGATGGGGGACGATTATCTTAAACATGTTCAAGAAGAATTTGA
TAATCGGTGGATTGATGTGGTGGAGAATCAGGGAAAACGAACCGGCGCTTATTCTTCAGGAATGTATGATACTAATCCGT
ATGTATTGTTAAATTGGCAAGATAACTTGGATAACATTTATACTTTGATTCACGAAACTGGACACAGTATGCACAGTTAT
TATTCTAGTCATAATCAACCATATCAATATGGTGATTATTCAATTTTTGTAGCCGAGATTGCATCGACTACGAATGAAAA
TATTTTAACTGATTATTTATTGGAAAATACAGCAGATCCAGAAATTAAAAAATATATTTTAAGTTCATATCTCGAAGGCT
TTAAGGGGACTATTTTTAGACAAACACAATTTGCGGAATTTGAAAATGAAATTCATCAAGCATCCCAAGCAGGAAAGGCT
TTAACTGCTGATTTTATGAATGAAAAATATTTAAAATTAAATCAAAAATATTATGGAAATCAAATCATTTCTGATCCTGA
AATTAAATTAGAATGGTCTAGAATTCCACATTTTTACTATGATTTTTATGTTTATCAATATGCTACGGGATTTGCTGCTG
CTTCAAATTTAGCTACTAATCTTACTAGTGGAAATGAGCGAGATTTACAAAATTATCTGGATTATTTGAAATCAGGTAGC
TCAAAAACGCCTATTGAAATCATGCAATTAGCTGGAGTTGATATGATGGATAGTAGTTATTTAGATAATGCATTTGCAAA
ATTTGCTAATCGTCTTGATCAGTTAGAAGATTTATTGTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-585)

Oligopeptidase F (Peptidase_M3_N)

(116-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2JW20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.986

98.831

0.484

Multiple sequence alignment