Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AYR60_RS00125 Genome accession   NZ_CP014872
Coordinates   22248..23630 (-) Length   460 a.a.
NCBI ID   WP_054646378.1    Uniprot ID   A0A0R2JZ73
Organism   Fructilactobacillus lindneri strain TMW 1.1993     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 17248..28630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR60_RS00100 (AYR60_00100) - 17444..17968 (-) 525 WP_054646381.1 NYN domain-containing protein -
  AYR60_RS00105 (AYR60_00105) rlmB 17982..18734 (-) 753 WP_056997669.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AYR60_RS00110 (AYR60_00110) - 18724..19149 (-) 426 WP_054646380.1 Mini-ribonuclease 3 -
  AYR60_RS00115 (AYR60_00115) cysS 19149..20567 (-) 1419 WP_054646379.1 cysteine--tRNA ligase -
  AYR60_RS00120 (AYR60_00120) gltX 20681..22171 (-) 1491 WP_056997670.1 glutamate--tRNA ligase -
  AYR60_RS00125 (AYR60_00125) radA 22248..23630 (-) 1383 WP_054646378.1 DNA repair protein RadA Machinery gene
  AYR60_RS00130 (AYR60_00130) - 23643..24179 (-) 537 WP_054646377.1 dUTP diphosphatase -
  AYR60_RS00135 (AYR60_00135) rpiA 24320..25006 (+) 687 WP_054646376.1 ribose-5-phosphate isomerase RpiA -
  AYR60_RS00140 (AYR60_00140) - 25045..26379 (+) 1335 WP_054646375.1 aminopeptidase C -
  AYR60_RS00145 (AYR60_00145) - 26423..27094 (-) 672 WP_054646374.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  AYR60_RS00150 (AYR60_00150) - 27282..28451 (+) 1170 WP_054646373.1 LCP family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50171.32 Da        Isoelectric Point: 6.5090

>NTDB_id=174932 AYR60_RS00125 WP_054646378.1 22248..23630(-) (radA) [Fructilactobacillus lindneri strain TMW 1.1993]
MSKTKTQFVCSNCGYISPNYLGRCPNCGEWNTFEEESVTKTDPQKVNTSRVSFEGKKSRPQLIDDVDAHDAPRFQIESNE
LNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSQAGKRILYVTGEESADQVKMRADRLKVNQNDNLYVFPETDMTA
IREAIANVKPDVVIVDSVQTMREDEVASAIGSVSQVRGVTADLMNVAKTNNITIFIVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHSYRLLRAVKNRFGSTNELGIFEMADTGLHEVANPSEIFLEERLQNATGSAIVVAMEGTRPILVEIQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLNEPAIDLAMAISIASSYENISTDPRECYIGELG
LTGEIRRVDRIEQRIREAAKLGFKKVIVPKHNLDGLHVPDNIEVVGVTTLREALKTSLKK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=174932 AYR60_RS00125 WP_054646378.1 22248..23630(-) (radA) [Fructilactobacillus lindneri strain TMW 1.1993]
ATGAGTAAAACAAAAACTCAGTTTGTATGTTCAAATTGTGGCTATATTTCTCCTAATTACTTAGGTCGTTGTCCTAATTG
TGGGGAGTGGAATACCTTTGAAGAGGAAAGTGTAACTAAAACTGATCCACAAAAGGTTAATACCAGTCGGGTTTCATTTG
AAGGAAAAAAATCACGTCCTCAATTAATTGATGATGTTGACGCCCATGATGCACCTCGTTTTCAGATTGAATCTAATGAG
TTAAATCGGGTATTAGGTGGAGGTATTGTTCCTGGATCATTGGTTTTAATCGGTGGTGATCCAGGAATCGGTAAATCAAC
TTTATTATTACAGGTTTCTGGACAGTTAAGTCAGGCTGGGAAACGTATTTTATATGTAACAGGAGAAGAAAGTGCTGATC
AGGTTAAGATGAGAGCTGACCGCTTAAAAGTTAACCAAAATGATAATCTATATGTTTTTCCAGAAACTGATATGACAGCA
ATTCGAGAGGCAATTGCAAACGTTAAGCCTGATGTAGTAATTGTTGATTCTGTTCAAACAATGCGAGAAGACGAAGTCGC
TTCTGCCATCGGATCGGTTTCACAAGTTCGTGGGGTGACAGCTGATTTAATGAATGTTGCCAAAACCAATAATATTACAA
TTTTTATTGTTGGACATGTGACTAAAGGCGGAGCAATAGCTGGGCCTAAAACGTTAGAACATATGGTTGATACGGTTTTA
TATTTTGAAGGCGATAAACATCATTCATATCGCTTATTGCGAGCCGTTAAAAATCGATTTGGTTCCACGAACGAACTAGG
AATATTTGAAATGGCAGATACTGGCTTACATGAAGTAGCTAATCCTTCCGAAATTTTTCTAGAAGAACGATTACAAAATG
CAACTGGTTCTGCAATCGTTGTAGCTATGGAAGGAACTCGTCCCATTTTAGTAGAAATTCAAGCACTAATTACTCCATCT
GTATTTGGCAATGCACAACGCACTGCTACTGGGGTTGATCGAAATCGAGTATCGTTGATTATGGCAGTTTTAGAAAAACG
AGCCGGTTTGATGCTGCAGAATCAAGATGCATATTTAAAGGCTGCTGGTGGGGTTAAACTAAATGAACCAGCAATTGATT
TAGCAATGGCTATTAGTATTGCCTCTAGTTATGAAAATATTAGTACCGATCCCCGGGAATGTTATATTGGCGAGTTAGGT
TTGACTGGTGAAATTAGACGGGTAGACCGAATTGAACAACGAATTCGAGAAGCAGCTAAATTAGGTTTCAAAAAGGTAAT
TGTGCCTAAACATAACTTGGATGGACTTCATGTTCCGGACAATATTGAAGTTGTAGGTGTCACTACCTTACGCGAGGCTT
TAAAGACATCATTAAAAAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2JZ73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

64.615

98.913

0.639
  radA Streptococcus pneumoniae D39

64.615

98.913

0.639
  radA Streptococcus pneumoniae R6

64.615

98.913

0.639
  radA Streptococcus pneumoniae TIGR4

64.615

98.913

0.639
  radA Streptococcus mitis NCTC 12261

64.615

98.913

0.639
  radA Streptococcus mitis SK321

64.615

98.913

0.639
  radA Bacillus subtilis subsp. subtilis str. 168

61.822

100

0.62

Multiple sequence alignment