Detailed information NTG0174913

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BS635_RS02355
• Genome accession: NZ_CP018323
• Coordinates: 444985..445977 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain KSC9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 439985..450977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BS635_RS02330 (BS635_02325)	ygbN	440640..442004 (+)	1365	WP_000104439.1	GntP family transporter	-
BS635_RS02335 (BS635_02330)	-	442043..442279 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BS635_RS02340 (BS635_02335)	-	442290..443717 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BS635_RS02345 (BS635_02340)	-	443717..444310 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BS635_RS02350 (BS635_02345)	-	444457..444864 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
BS635_RS02355 (BS635_02350)	rpoS	444985..445977 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BS635_RS02360 (BS635_02355)	nlpD	446040..447134 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
BS635_RS02365 (BS635_02360)	pcm	447319..447945 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BS635_RS02370 (BS635_02365)	surE	447939..448700 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BS635_RS02375 (BS635_02370)	truD	448681..449730 (-)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
BS635_RS02380 (BS635_02375)	ispF	449727..450206 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BS635_RS02385 (BS635_02380)	ispD	450206..450916 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=174913 BS635_RS02355 WP_000081550.1 444985..445977(-) (rpoS) [Escherichia coli strain KSC9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=174913 BS635_RS02355 WP_000081550.1 444985..445977(-) (rpoS) [Escherichia coli strain KSC9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715