Detailed information NTG0174888

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: A3218_RS17095
• Genome accession: NZ_CP014867
• Coordinates: 3884000..3885328 (-)
• Length: 442 a.a.
• NCBI ID: WP_062824554.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain 189 isolate 189
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3879000..3890328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A3218_RS17080 (A3218_17080)	-	3879362..3882433 (+)	3072	WP_062824552.1	PilC/PilY family type IV pilus protein	-
A3218_RS17085 (A3218_17085)	-	3882447..3882848 (+)	402	WP_007924724.1	type IV pilin protein	-
A3218_RS17090 (A3218_17090)	thiO	3882903..3884003 (+)	1101	WP_062824553.1	glycine oxidase ThiO	-
A3218_RS17095 (A3218_17095)	pilR	3884000..3885328 (-)	1329	WP_062824554.1	sigma-54 dependent transcriptional regulator	Regulator
A3218_RS17100 (A3218_17100)	-	3885613..3885846 (-)	234	WP_062824555.1	PP0621 family protein	-
A3218_RS17105 (A3218_17105)	-	3885980..3887002 (-)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
A3218_RS17110 (A3218_17110)	rluD	3887154..3888116 (+)	963	WP_007924719.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
A3218_RS17115 (A3218_17115)	pgeF	3888113..3888838 (+)	726	WP_009045694.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48914.48 Da
• Isoelectric Point: 9.2343

>NTDB_id=174888 A3218_RS17095 WP_062824554.1 3884000..3885328(-) (pilR) [Pseudomonas chlororaphis strain 189 isolate 189]
MSPRQKVLIVDDDPGIREYLEISLGRMQHHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQCRQLRMPLA
ILSTCARQETAVHALKAGAIDFLSKPLALARLRELLNGALPGSTPPNPATGPLLGDSAAMHKLREQIGKLARSQASVYIS
GESGSGKELVARAIHDLGPRARHAFVPVNCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKALLAEVHAGRFRQDLYYRLNVIELLVPALRARKADIEPLATAILE
RLAQGNGQQLARLQPSALQALQGYDFPGNVRELENLLERAHTLCENRRIEARDLRLTPNSAHPAITPGPAQVINLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=174888 A3218_RS17095 WP_062824554.1 3884000..3885328(-) (pilR) [Pseudomonas chlororaphis strain 189 isolate 189]
ATGAGCCCACGACAAAAAGTCTTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACACCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGCTTCGACCTGTGCCTGA
GCGACCTGCATTTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGTGCCGCCAGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCACGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAGCCCCT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAATGGCGCCCTGCCCGGATCGACACCACCGAACCCTGCCACCGGCCCATTGC
TCGGCGATTCGGCCGCCATGCACAAGCTGCGCGAACAAATCGGCAAACTGGCCCGGAGCCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGAAGCGGCAAGGAACTGGTCGCCCGCGCAATCCACGACCTGGGTCCTCGGGCCAGACACGCCTTCGTGCC
GGTCAATTGCGGAGCCATCCCACCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCTA
TCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGCGCGCTGCAGGAGAAGGCGGTACGTTGCGTCGGCGGGCAACAGGAGGTCCAGGTCGATGT
ACGCATTCTCTGCGCCACCCACAAGGCGTTGCTGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TGAACGTGATCGAGTTGCTGGTGCCAGCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACCGCCATTCTCGAG
CGCCTGGCGCAGGGTAACGGCCAACAACTGGCACGGCTTCAGCCAAGCGCGCTGCAAGCGCTCCAGGGCTACGACTTTCC
CGGTAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCGGATCGAAGCACGCGACC
TGCGCCTGACGCCAAACAGCGCCCACCCGGCCATCACGCCCGGACCGGCACAGGTGATCAACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACCGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.444	100	0.676
pilR	Acinetobacter baumannii strain A118	43.818	100	0.457