Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   A1T07_RS17980 Genome accession   NZ_CP014856
Coordinates   3740383..3740715 (-) Length   110 a.a.
NCBI ID   WP_012295159.1    Uniprot ID   -
Organism   Lysinibacillus sphaericus strain III(3)7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3735383..3745715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1T07_RS17945 (A1T07_17945) gcvPA 3735520..3736866 (-) 1347 WP_012295153.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  A1T07_RS17950 (A1T07_17950) gcvT 3736892..3737995 (-) 1104 WP_012295154.1 glycine cleavage system aminomethyltransferase GcvT -
  A1T07_RS17955 (A1T07_17955) - 3738498..3739013 (-) 516 WP_031416947.1 shikimate kinase -
  A1T07_RS17965 (A1T07_17965) comGF 3739212..3739640 (-) 429 WP_012295156.1 competence type IV pilus minor pilin ComGF -
  A1T07_RS17970 (A1T07_17970) - 3739633..3739950 (-) 318 WP_012295157.1 hypothetical protein -
  A1T07_RS17975 (A1T07_17975) comGD 3739943..3740383 (-) 441 WP_012295158.1 competence type IV pilus minor pilin ComGD -
  A1T07_RS17980 (A1T07_17980) comGC 3740383..3740715 (-) 333 WP_012295159.1 competence type IV pilus major pilin ComGC Machinery gene
  A1T07_RS17985 (A1T07_17985) comGB 3740726..3741799 (-) 1074 WP_012295160.1 competence type IV pilus assembly protein ComGB -
  A1T07_RS17990 (A1T07_17990) comGA 3741774..3742793 (-) 1020 WP_012295161.1 competence type IV pilus ATPase ComGA -
  A1T07_RS17995 (A1T07_17995) - 3743122..3743832 (+) 711 WP_012295162.1 helix-turn-helix transcriptional regulator -
  A1T07_RS18000 (A1T07_18000) - 3743950..3744192 (+) 243 WP_004231035.1 DUF2626 family protein -
  A1T07_RS18005 (A1T07_18005) - 3744252..3744896 (-) 645 WP_012295163.1 MBL fold metallo-hydrolase -
  A1T07_RS18010 (A1T07_18010) - 3745065..3745244 (+) 180 WP_031416957.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12302.40 Da        Isoelectric Point: 4.6258

>NTDB_id=174775 A1T07_RS17980 WP_012295159.1 3740383..3740715(-) (comGC) [Lysinibacillus sphaericus strain III(3)7]
MKQIKQQNGFTLIEMLIVLLIISILILITIPNVTKHFATIDEKGCAAYINMVQGQVEAYRVDFMTFPTLEDLVKEGYLKE
NETTCPNKEEIVITIKGEVRLANADAGTQG

Nucleotide


Download         Length: 333 bp        

>NTDB_id=174775 A1T07_RS17980 WP_012295159.1 3740383..3740715(-) (comGC) [Lysinibacillus sphaericus strain III(3)7]
ATGAAACAAATCAAACAACAAAATGGCTTTACTTTAATCGAAATGCTGATTGTTTTGTTAATTATATCAATCCTTATTTT
AATTACAATTCCAAATGTTACGAAGCACTTTGCTACGATTGATGAGAAGGGCTGTGCGGCCTATATTAATATGGTGCAGG
GGCAAGTAGAGGCCTATAGAGTGGATTTTATGACATTTCCGACCCTTGAGGATTTAGTGAAGGAGGGCTATTTGAAAGAA
AATGAAACAACTTGCCCTAATAAAGAAGAAATAGTCATTACGATTAAAGGAGAGGTACGCTTAGCAAATGCTGATGCAGG
TACTCAAGGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.082

89.091

0.482
  comGC Staphylococcus aureus MW2

45.263

86.364

0.391
  comGC Staphylococcus aureus N315

45.263

86.364

0.391

Multiple sequence alignment