Detailed information NTG0174732

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BFL16_RS21825
• Genome accession: NZ_CP018252
• Coordinates: 4377089..4378081 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 9000
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4372089..4383081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFL16_RS21800 (BFL16_20080)	pphB	4373451..4374107 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
BFL16_RS21805 (BFL16_20085)	-	4374148..4374384 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BFL16_RS21810 (BFL16_20090)	-	4374395..4375822 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BFL16_RS21815 (BFL16_20095)	-	4375822..4376415 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BFL16_RS21820 (BFL16_20100)	-	4376562..4376969 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
BFL16_RS21825 (BFL16_20105)	rpoS	4377089..4378081 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BFL16_RS21830 (BFL16_20110)	nlpD	4378144..4379238 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
BFL16_RS21835 (BFL16_20115)	pcm	4379423..4380049 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BFL16_RS21840 (BFL16_20120)	surE	4380043..4380804 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BFL16_RS21845 (BFL16_20125)	truD	4380785..4381834 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
BFL16_RS21850 (BFL16_20130)	ispF	4381831..4382310 (-)	480	WP_072643164.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BFL16_RS21855 (BFL16_20135)	ispD	4382310..4383020 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=174732 BFL16_RS21825 WP_000081550.1 4377089..4378081(-) (rpoS) [Escherichia coli strain 9000]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=174732 BFL16_RS21825 WP_000081550.1 4377089..4378081(-) (rpoS) [Escherichia coli strain 9000]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715