Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BFL16_RS21560 Genome accession   NZ_CP018252
Coordinates   4328174..4328689 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain 9000     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4323174..4333689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFL16_RS21535 (BFL16_19805) ygaZ 4323573..4324310 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  BFL16_RS21540 (BFL16_19810) ygaH 4324300..4324635 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  BFL16_RS21545 (BFL16_19815) emrR 4324726..4325256 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BFL16_RS21550 (BFL16_19820) emrA 4325383..4326555 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BFL16_RS21555 (BFL16_19825) emrB 4326572..4328110 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BFL16_RS21560 (BFL16_19830) luxS 4328174..4328689 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  BFL16_RS21565 (BFL16_19835) gshA 4328839..4330395 (-) 1557 WP_000611787.1 glutamate--cysteine ligase -
  BFL16_RS21570 (BFL16_19840) yqaA 4330468..4330896 (-) 429 WP_001287450.1 YqaA family protein -
  BFL16_RS21575 (BFL16_19845) yqaB 4330893..4331459 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BFL16_RS21605 (BFL16_19875) csrA 4332687..4332872 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=174729 BFL16_RS21560 WP_001130215.1 4328174..4328689(-) (luxS) [Escherichia coli strain 9000]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=174729 BFL16_RS21560 WP_001130215.1 4328174..4328689(-) (luxS) [Escherichia coli strain 9000]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725