Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   A3L20_RS12925 Genome accession   NZ_CP014847
Coordinates   2515611..2515889 (+) Length   92 a.a.
NCBI ID   WP_000842214.1    Uniprot ID   A0A9W5VLT2
Organism   Bacillus thuringiensis strain HD12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2510611..2520889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L20_RS12905 (A3L20_12905) - 2512382..2513191 (+) 810 WP_016077711.1 papain-like cysteine protease family protein -
  A3L20_RS12910 (A3L20_12910) - 2513217..2513822 (+) 606 WP_000517276.1 hypothetical protein -
  A3L20_RS12915 (A3L20_12915) - 2513963..2514214 (-) 252 WP_000821942.1 response regulator transcription factor -
  A3L20_RS12920 (A3L20_12920) - 2514592..2515470 (+) 879 WP_000397974.1 helix-turn-helix domain-containing protein -
  A3L20_RS12925 (A3L20_12925) abrB 2515611..2515889 (+) 279 WP_000842214.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  A3L20_RS12930 (A3L20_12930) - 2516501..2517751 (+) 1251 WP_001032355.1 hypothetical protein -
  A3L20_RS12935 (A3L20_12935) - 2517819..2518577 (+) 759 WP_042598004.1 TSUP family transporter -
  A3L20_RS12940 (A3L20_12940) - 2518830..2519489 (+) 660 WP_000682536.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10363.20 Da        Isoelectric Point: 9.6547

>NTDB_id=174717 A3L20_RS12925 WP_000842214.1 2515611..2515889(+) (abrB) [Bacillus thuringiensis strain HD12]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=174717 A3L20_RS12925 WP_000842214.1 2515611..2515889(+) (abrB) [Bacillus thuringiensis strain HD12]
ATGAAATCAAGAGGGATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGTGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGGACGGAA
CTATTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.111

97.826

0.5

Multiple sequence alignment