Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   A3L20_RS08275 Genome accession   NZ_CP014847
Coordinates   1597895..1598497 (-) Length   200 a.a.
NCBI ID   WP_000155599.1    Uniprot ID   A0A9W5VMY9
Organism   Bacillus thuringiensis strain HD12     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1592895..1603497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L20_RS08255 (A3L20_08255) dnaD 1593207..1593914 (+) 708 WP_000728537.1 DNA replication protein DnaD -
  A3L20_RS08260 (A3L20_08260) nth 1593930..1594577 (+) 648 WP_000933035.1 endonuclease III -
  A3L20_RS08265 (A3L20_08265) - 1594581..1595099 (+) 519 WP_000442661.1 YpoC family protein -
  A3L20_RS08270 (A3L20_08270) - 1595126..1597828 (-) 2703 WP_001283103.1 PBP1A family penicillin-binding protein -
  A3L20_RS08275 (A3L20_08275) recU 1597895..1598497 (-) 603 WP_000155599.1 Holliday junction resolvase RecU Machinery gene
  A3L20_RS08280 (A3L20_08280) - 1598601..1599626 (+) 1026 WP_003277507.1 DUF2515 domain-containing protein -
  A3L20_RS08285 (A3L20_08285) - 1600254..1601483 (+) 1230 WP_001236353.1 IS110 family transposase -
  A3L20_RS33225 - 1601628..1601690 (-) 63 Protein_1596 phage portal protein -
  A3L20_RS08290 (A3L20_08290) - 1601776..1602018 (+) 243 WP_001252036.1 hypothetical protein -
  A3L20_RS08295 (A3L20_08295) - 1602034..1602378 (+) 345 WP_000786936.1 YppE family protein -
  A3L20_RS08300 (A3L20_08300) - 1602405..1602596 (-) 192 WP_000242652.1 YppF family protein -
  A3L20_RS08305 (A3L20_08305) - 1602774..1603379 (+) 606 WP_000487717.1 YppG family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23325.54 Da        Isoelectric Point: 9.4336

>NTDB_id=174714 A3L20_RS08275 WP_000155599.1 1597895..1598497(-) (recU) [Bacillus thuringiensis strain HD12]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=174714 A3L20_RS08275 WP_000155599.1 1597895..1598497(-) (recU) [Bacillus thuringiensis strain HD12]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGCAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment