Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   A3L20_RS06940 Genome accession   NZ_CP014847
Coordinates   1350371..1350694 (-) Length   107 a.a.
NCBI ID   WP_000578875.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HD12     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1345371..1355694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L20_RS06915 (A3L20_06915) - 1345695..1346981 (+) 1287 WP_000247025.1 D-alanyl-D-alanine carboxypeptidase family protein -
  A3L20_RS06920 (A3L20_06920) sipW 1347176..1347745 (+) 570 WP_000767804.1 signal peptidase I SipW -
  A3L20_RS06925 (A3L20_06925) - 1347806..1348393 (+) 588 WP_000172852.1 CalY family protein -
  A3L20_RS06930 (A3L20_06930) - 1348528..1349316 (+) 789 WP_016077956.1 DUF4047 domain-containing protein -
  A3L20_RS06935 (A3L20_06935) calY 1349705..1350298 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  A3L20_RS06940 (A3L20_06940) sinR 1350371..1350694 (-) 324 WP_000578875.1 helix-turn-helix domain-containing protein Regulator
  A3L20_RS06945 (A3L20_06945) - 1350774..1350908 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  A3L20_RS06950 (A3L20_06950) inhA1 1351251..1353638 (+) 2388 WP_001035950.1 M6 family metalloprotease immune inhibitor InhA1 -
  A3L20_RS06955 (A3L20_06955) - 1353810..1355177 (+) 1368 WP_000028385.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12291.16 Da        Isoelectric Point: 9.9745

>NTDB_id=174712 A3L20_RS06940 WP_000578875.1 1350371..1350694(-) (sinR) [Bacillus thuringiensis strain HD12]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=174712 A3L20_RS06940 WP_000578875.1 1350371..1350694(-) (sinR) [Bacillus thuringiensis strain HD12]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment