Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | BFL16_RS10005 | Genome accession | NZ_CP018252 |
| Coordinates | 2145639..2146115 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli strain 9000 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2140639..2151115
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFL16_RS09985 (BFL16_07190) | - | 2141917..2142822 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| BFL16_RS09990 (BFL16_07195) | - | 2142819..2143889 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| BFL16_RS09995 (BFL16_07210) | - | 2144229..2145047 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| BFL16_RS10000 (BFL16_07215) | - | 2145138..2145623 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| BFL16_RS10005 (BFL16_07220) | radC | 2145639..2146115 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| BFL16_RS10010 (BFL16_07225) | - | 2146178..2146399 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| BFL16_RS10015 (BFL16_07235) | - | 2146562..2146936 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| BFL16_RS10020 (BFL16_07240) | - | 2146983..2147357 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| BFL16_RS10025 (BFL16_07245) | - | 2147354..2147845 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| BFL16_RS10030 (BFL16_07250) | - | 2147857..2148054 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| BFL16_RS10035 (BFL16_07255) | - | 2148139..2148981 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| BFL16_RS10045 (BFL16_07265) | ghrA | 2149452..2150390 (+) | 939 | WP_000351284.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=174707 BFL16_RS10005 WP_001186738.1 2145639..2146115(+) (radC) [Escherichia coli strain 9000]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=174707 BFL16_RS10005 WP_001186738.1 2145639..2146115(+) (radC) [Escherichia coli strain 9000]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |