Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | A3L20_RS01865 | Genome accession | NZ_CP014847 |
| Coordinates | 349190..349468 (+) | Length | 92 a.a. |
| NCBI ID | WP_042596968.1 | Uniprot ID | A0A9X6Z675 |
| Organism | Bacillus thuringiensis strain HD12 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 340463..384271 | 349190..349468 | within | 0 |
Gene organization within MGE regions
Location: 340463..384271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A3L20_RS01815 (A3L20_01815) | - | 340463..341587 (-) | 1125 | WP_042596948.1 | tyrosine-type recombinase/integrase | - |
| A3L20_RS35425 | - | 341762..341920 (+) | 159 | WP_000970855.1 | hypothetical protein | - |
| A3L20_RS01820 (A3L20_01820) | - | 342350..343213 (-) | 864 | WP_042596950.1 | hypothetical protein | - |
| A3L20_RS01825 (A3L20_01825) | - | 343393..343746 (-) | 354 | WP_042596951.1 | helix-turn-helix domain-containing protein | - |
| A3L20_RS01830 (A3L20_01830) | - | 344251..345390 (+) | 1140 | WP_042596953.1 | AimR family lysis-lysogeny pheromone receptor | - |
| A3L20_RS35430 | - | 345393..345536 (+) | 144 | WP_003276351.1 | hypothetical protein | - |
| A3L20_RS36500 | - | 345739..345867 (+) | 129 | WP_254905051.1 | hypothetical protein | - |
| A3L20_RS01835 (A3L20_01835) | - | 345879..346232 (-) | 354 | WP_042596955.1 | helix-turn-helix domain-containing protein | - |
| A3L20_RS01840 (A3L20_01840) | - | 346460..346684 (+) | 225 | WP_042596958.1 | helix-turn-helix domain-containing protein | - |
| A3L20_RS01845 (A3L20_01845) | - | 346700..347050 (+) | 351 | WP_042596960.1 | helix-turn-helix domain-containing protein | - |
| A3L20_RS35060 | - | 347047..347196 (+) | 150 | WP_155721722.1 | hypothetical protein | - |
| A3L20_RS35435 | - | 347244..347420 (+) | 177 | WP_042596961.1 | hypothetical protein | - |
| A3L20_RS01850 (A3L20_01850) | - | 347425..348165 (+) | 741 | WP_042596963.1 | DnaD domain protein | - |
| A3L20_RS01855 (A3L20_01855) | - | 348113..348976 (+) | 864 | WP_042596964.1 | ATP-binding protein | - |
| A3L20_RS01860 (A3L20_01860) | - | 348979..349173 (+) | 195 | WP_042596967.1 | hypothetical protein | - |
| A3L20_RS01865 (A3L20_01865) | abrB | 349190..349468 (+) | 279 | WP_042596968.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| A3L20_RS01870 (A3L20_01870) | - | 349461..349820 (+) | 360 | WP_042596970.1 | hypothetical protein | - |
| A3L20_RS32745 | - | 349839..350006 (+) | 168 | WP_042596972.1 | DUF3954 domain-containing protein | - |
| A3L20_RS01875 (A3L20_01875) | - | 350032..350283 (+) | 252 | WP_042596973.1 | hypothetical protein | - |
| A3L20_RS01880 (A3L20_01880) | - | 350303..350758 (+) | 456 | WP_042596975.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| A3L20_RS01885 (A3L20_01885) | - | 351021..351212 (+) | 192 | WP_000283199.1 | hypothetical protein | - |
| A3L20_RS36835 | - | 351232..351795 (+) | 564 | WP_080775449.1 | hypothetical protein | - |
| A3L20_RS01895 (A3L20_01895) | - | 351809..352084 (+) | 276 | WP_042596978.1 | hypothetical protein | - |
| A3L20_RS01900 (A3L20_01900) | - | 352132..352389 (+) | 258 | WP_042596980.1 | hypothetical protein | - |
| A3L20_RS01905 (A3L20_01905) | - | 352420..352725 (+) | 306 | WP_042596982.1 | hypothetical protein | - |
| A3L20_RS01910 (A3L20_01910) | ltrA | 353444..355243 (+) | 1800 | WP_000108305.1 | group II intron reverse transcriptase/maturase | - |
| A3L20_RS01915 (A3L20_01915) | - | 355361..355681 (+) | 321 | WP_042596985.1 | hypothetical protein | - |
| A3L20_RS01920 (A3L20_01920) | - | 355720..355980 (+) | 261 | WP_042596986.1 | hypothetical protein | - |
| A3L20_RS01925 (A3L20_01925) | - | 356176..356400 (+) | 225 | WP_231130549.1 | hypothetical protein | - |
| A3L20_RS01930 (A3L20_01930) | - | 356516..356725 (+) | 210 | WP_042596990.1 | hypothetical protein | - |
| A3L20_RS01935 (A3L20_01935) | - | 356771..357037 (+) | 267 | WP_052497238.1 | hypothetical protein | - |
| A3L20_RS35450 | - | 357149..357319 (+) | 171 | WP_042596992.1 | hypothetical protein | - |
| A3L20_RS01940 (A3L20_01940) | - | 357347..357829 (+) | 483 | WP_000166190.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| A3L20_RS01945 (A3L20_01945) | - | 357829..358371 (+) | 543 | WP_001012113.1 | site-specific integrase | - |
| A3L20_RS01950 (A3L20_01950) | - | 359006..359188 (+) | 183 | WP_042596994.1 | hypothetical protein | - |
| A3L20_RS36715 (A3L20_01955) | - | 359220..359648 (+) | 429 | WP_042596997.1 | hypothetical protein | - |
| A3L20_RS01960 (A3L20_01960) | - | 359648..359872 (+) | 225 | WP_042597000.1 | hypothetical protein | - |
| A3L20_RS36720 | - | 359877..360041 (+) | 165 | Protein_336 | helix-turn-helix domain-containing protein | - |
| A3L20_RS01970 (A3L20_01970) | - | 360157..360492 (+) | 336 | WP_042597003.1 | HNH endonuclease | - |
| A3L20_RS01975 (A3L20_01975) | - | 360643..360999 (+) | 357 | WP_042597004.1 | hypothetical protein | - |
| A3L20_RS01980 (A3L20_01980) | - | 360996..362651 (+) | 1656 | WP_042597006.1 | terminase TerL endonuclease subunit | - |
| A3L20_RS01985 (A3L20_01985) | - | 362656..363801 (+) | 1146 | WP_080775450.1 | phage portal protein | - |
| A3L20_RS01990 (A3L20_01990) | - | 363936..365165 (-) | 1230 | WP_001236353.1 | IS110 family transposase | - |
| A3L20_RS01995 (A3L20_01995) | - | 365539..366327 (+) | 789 | WP_062804247.1 | head maturation protease, ClpP-related | - |
| A3L20_RS02000 (A3L20_02000) | - | 366331..367485 (+) | 1155 | WP_000234879.1 | phage major capsid protein | - |
| A3L20_RS02005 (A3L20_02005) | - | 367491..367784 (+) | 294 | WP_000536353.1 | hypothetical protein | - |
| A3L20_RS02010 (A3L20_02010) | - | 367786..368160 (+) | 375 | WP_001182260.1 | phage head closure protein | - |
| A3L20_RS02015 (A3L20_02015) | - | 368148..368585 (+) | 438 | WP_062804248.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| A3L20_RS02020 (A3L20_02020) | gp17 | 368582..368944 (+) | 363 | WP_062804249.1 | tail completion protein gp17 | - |
| A3L20_RS02025 (A3L20_02025) | - | 368960..369544 (+) | 585 | WP_062804250.1 | major tail protein | - |
| A3L20_RS02030 (A3L20_02030) | gpG | 369601..369975 (+) | 375 | WP_042989393.1 | phage tail assembly chaperone G | - |
| A3L20_RS36505 | - | 369996..370121 (+) | 126 | WP_003285973.1 | hypothetical protein | - |
| A3L20_RS02035 (A3L20_02035) | - | 370140..375137 (+) | 4998 | WP_062804251.1 | phage tail tape measure protein | - |
| A3L20_RS02040 (A3L20_02040) | - | 375177..376646 (+) | 1470 | WP_042597010.1 | distal tail protein Dit | - |
| A3L20_RS02045 (A3L20_02045) | - | 376643..381493 (+) | 4851 | WP_062804252.1 | phage tail spike protein | - |
| A3L20_RS02050 (A3L20_02050) | - | 381510..381887 (+) | 378 | WP_000354139.1 | hypothetical protein | - |
| A3L20_RS02055 (A3L20_02055) | - | 381989..382948 (+) | 960 | WP_042597018.1 | tyrosine-type recombinase/integrase | - |
| A3L20_RS02060 (A3L20_02060) | - | 382963..383244 (+) | 282 | WP_042597020.1 | hypothetical protein | - |
| A3L20_RS02065 (A3L20_02065) | - | 383247..383453 (+) | 207 | WP_000159646.1 | hypothetical protein | - |
| A3L20_RS02070 (A3L20_02070) | - | 383453..384271 (+) | 819 | WP_042597022.1 | GH25 family lysozyme | - |
Sequence
Protein
Download Length: 92 a.a. Molecular weight: 10070.68 Da Isoelectric Point: 7.1683
>NTDB_id=174699 A3L20_RS01865 WP_042596968.1 349190..349468(+) (abrB) [Bacillus thuringiensis strain HD12]
MKDTGVTRKVDELGRVVIPVELRRTLGIAEGTALDFHVDGENIVLRKPEKSCLVTGEVSESNMEFFGGRMFLSKAGAKEL
LNALEKSVKVHA
MKDTGVTRKVDELGRVVIPVELRRTLGIAEGTALDFHVDGENIVLRKPEKSCLVTGEVSESNMEFFGGRMFLSKAGAKEL
LNALEKSVKVHA
Nucleotide
Download Length: 279 bp
>NTDB_id=174699 A3L20_RS01865 WP_042596968.1 349190..349468(+) (abrB) [Bacillus thuringiensis strain HD12]
ATGAAAGACACAGGCGTTACAAGAAAAGTAGACGAGCTAGGTCGTGTGGTAATTCCGGTAGAGTTACGCAGAACTTTAGG
GATTGCTGAAGGGACAGCACTAGACTTTCATGTTGATGGGGAAAACATCGTTTTAAGAAAACCAGAAAAATCATGCTTGG
TGACGGGGGAAGTTTCTGAATCGAACATGGAATTTTTTGGCGGTAGAATGTTTTTGAGTAAGGCAGGAGCAAAAGAATTA
CTTAATGCTCTTGAAAAGAGTGTGAAGGTACATGCCTAA
ATGAAAGACACAGGCGTTACAAGAAAAGTAGACGAGCTAGGTCGTGTGGTAATTCCGGTAGAGTTACGCAGAACTTTAGG
GATTGCTGAAGGGACAGCACTAGACTTTCATGTTGATGGGGAAAACATCGTTTTAAGAAAACCAGAAAAATCATGCTTGG
TGACGGGGGAAGTTTCTGAATCGAACATGGAATTTTTTGGCGGTAGAATGTTTTTGAGTAAGGCAGGAGCAAAAGAATTA
CTTAATGCTCTTGAAAAGAGTGTGAAGGTACATGCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
54.945 |
98.913 |
0.543 |