Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B14_RS14005 Genome accession   NZ_CP014842
Coordinates   2692193..2692480 (-) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain SCDB 14     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2687193..2697480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS13990 (B14_02795) ade 2688112..2689833 (-) 1722 WP_003181389.1 adenine deaminase -
  B14_RS13995 (B14_02796) - 2689961..2690623 (-) 663 WP_003181388.1 potassium channel family protein -
  B14_RS14000 (B14_02797) - 2690688..2692025 (-) 1338 WP_011197947.1 ATP-binding protein -
  B14_RS14005 (B14_02798) abrB 2692193..2692480 (-) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  B14_RS14010 (B14_02799) mreBH 2692787..2693794 (+) 1008 WP_003181381.1 rod-share determining protein MreBH -
  B14_RS22475 (B14_02800) - 2693868..2693999 (+) 132 WP_003181378.1 protein YkpC -
  B14_RS14015 (B14_02801) - 2694090..2695322 (+) 1233 WP_011197946.1 aminopeptidase -
  B14_RS14020 (B14_02802) - 2695460..2695834 (-) 375 WP_003181373.1 YybH family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=174670 B14_RS14005 WP_003181383.1 2692193..2692480(-) (abrB) [Bacillus licheniformis strain SCDB 14]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=174670 B14_RS14005 WP_003181383.1 2692193..2692480(-) (abrB) [Bacillus licheniformis strain SCDB 14]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment