Detailed information NTG0174634

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BFL17_RS19660
• Genome accession: NZ_CP018250
• Coordinates: 3555697..3556689 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 10671
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3550697..3561689

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFL17_RS19635 (BFL17_19470)	pphB	3552059..3552715 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
BFL17_RS19640 (BFL17_19475)	-	3552756..3552992 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BFL17_RS19645 (BFL17_19480)	-	3553003..3554430 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BFL17_RS19650 (BFL17_19485)	-	3554430..3555023 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BFL17_RS19655 (BFL17_19490)	-	3555170..3555577 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
BFL17_RS19660 (BFL17_19495)	rpoS	3555697..3556689 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BFL17_RS19665 (BFL17_19500)	nlpD	3556752..3557846 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
BFL17_RS19670 (BFL17_19505)	pcm	3558031..3558657 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BFL17_RS19675 (BFL17_19510)	surE	3558651..3559412 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BFL17_RS19680 (BFL17_19515)	truD	3559393..3560442 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
BFL17_RS19685 (BFL17_19520)	ispF	3560439..3560918 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BFL17_RS19690 (BFL17_19525)	ispD	3560918..3561628 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=174634 BFL17_RS19660 WP_000081550.1 3555697..3556689(-) (rpoS) [Escherichia coli strain 10671]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=174634 BFL17_RS19660 WP_000081550.1 3555697..3556689(-) (rpoS) [Escherichia coli strain 10671]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715