Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | BFL17_RS05875 | Genome accession | NZ_CP018250 |
| Coordinates | 1127658..1128134 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186738.1 | Uniprot ID | B7UP40 |
| Organism | Escherichia coli strain 10671 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1122658..1133134
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFL17_RS05845 (BFL17_05785) | - | 1123936..1124841 (+) | 906 | WP_000203541.1 | diguanylate cyclase regulator RdcB family protein | - |
| BFL17_RS05850 (BFL17_05790) | - | 1124838..1125908 (+) | 1071 | WP_000102669.1 | patatin-like phospholipase family protein | - |
| BFL17_RS05865 (BFL17_05805) | - | 1126248..1127066 (+) | 819 | WP_001234682.1 | DUF932 domain-containing protein | - |
| BFL17_RS05870 (BFL17_05810) | - | 1127157..1127642 (+) | 486 | WP_000214398.1 | antirestriction protein | - |
| BFL17_RS05875 (BFL17_05815) | radC | 1127658..1128134 (+) | 477 | WP_001186738.1 | RadC family protein | Machinery gene |
| BFL17_RS05880 (BFL17_05820) | - | 1128197..1128418 (+) | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| BFL17_RS05890 (BFL17_05830) | - | 1128581..1128955 (+) | 375 | WP_001280954.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| BFL17_RS05895 (BFL17_05835) | - | 1129002..1129376 (+) | 375 | WP_000854914.1 | TA system toxin CbtA family protein | - |
| BFL17_RS05900 (BFL17_05840) | - | 1129373..1129864 (+) | 492 | WP_000976853.1 | DUF5983 family protein | - |
| BFL17_RS05905 (BFL17_05845) | - | 1129876..1130073 (+) | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| BFL17_RS05910 (BFL17_05850) | - | 1130158..1131000 (+) | 843 | WP_001280481.1 | DUF4942 domain-containing protein | - |
| BFL17_RS05920 (BFL17_05860) | infA | 1131491..1131709 (-) | 219 | WP_001040187.1 | translation initiation factor IF-1 | - |
| BFL17_RS05930 (BFL17_05870) | aat | 1131994..1132698 (-) | 705 | WP_001241680.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17673.28 Da Isoelectric Point: 6.9242
>NTDB_id=174607 BFL17_RS05875 WP_001186738.1 1127658..1128134(+) (radC) [Escherichia coli strain 10671]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=174607 BFL17_RS05875 WP_001186738.1 1127658..1128134(+) (radC) [Escherichia coli strain 10671]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
71.519 |
0.392 |