Detailed information NTG0174555

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BFL18_RS19320
• Genome accession: NZ_CP018247
• Coordinates: 3487533..3488525 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 7784
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3482533..3493525

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFL18_RS19295 (BFL18_19090)	pphB	3483895..3484551 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
BFL18_RS19300 (BFL18_19095)	-	3484592..3484828 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BFL18_RS19305 (BFL18_19100)	-	3484839..3486266 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BFL18_RS19310 (BFL18_19105)	-	3486266..3486859 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BFL18_RS19315 (BFL18_19110)	-	3487006..3487413 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
BFL18_RS19320 (BFL18_19115)	rpoS	3487533..3488525 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BFL18_RS19325 (BFL18_19120)	nlpD	3488588..3489682 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
BFL18_RS19330 (BFL18_19125)	pcm	3489867..3490493 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BFL18_RS19335 (BFL18_19130)	surE	3490487..3491248 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BFL18_RS19340 (BFL18_19135)	truD	3491229..3492278 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
BFL18_RS19345 (BFL18_19140)	ispF	3492275..3492754 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BFL18_RS19350 (BFL18_19145)	ispD	3492754..3493464 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=174555 BFL18_RS19320 WP_000081550.1 3487533..3488525(-) (rpoS) [Escherichia coli strain 7784]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=174555 BFL18_RS19320 WP_000081550.1 3487533..3488525(-) (rpoS) [Escherichia coli strain 7784]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715