Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BCBMB205_RS00020 Genome accession   NZ_CP014838
Coordinates   2947..4059 (+) Length   370 a.a.
NCBI ID   WP_007409910.1    Uniprot ID   -
Organism   Bacillus velezensis strain CBMB205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1445..29183 2947..4059 within 0


Gene organization within MGE regions


Location: 1445..29183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCBMB205_RS00010 (BCBMB205_00020) dnaN 1445..2581 (+) 1137 WP_007409909.1 DNA polymerase III subunit beta -
  BCBMB205_RS00015 (BCBMB205_00030) rlbA 2716..2931 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  BCBMB205_RS00020 (BCBMB205_00040) recF 2947..4059 (+) 1113 WP_007409910.1 DNA replication/repair protein RecF Machinery gene
  BCBMB205_RS00025 (BCBMB205_00050) remB 4077..4322 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  BCBMB205_RS00030 (BCBMB205_00060) gyrB 4379..6295 (+) 1917 WP_007409911.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BCBMB205_RS00035 (BCBMB205_00070) gyrA 6511..8970 (+) 2460 WP_032875298.1 DNA gyrase subunit A -
  BCBMB205_RS00065 (BCBMB205_00080) - 14308..15258 (-) 951 WP_032872151.1 YaaC family protein -
  BCBMB205_RS00070 (BCBMB205_00090) guaB 15379..16845 (+) 1467 WP_007408741.1 IMP dehydrogenase -
  BCBMB205_RS00075 (BCBMB205_00100) dacA 16998..18329 (+) 1332 WP_029326157.1 D-alanyl-D-alanine carboxypeptidase -
  BCBMB205_RS00080 (BCBMB205_00110) pdxS 18526..19410 (+) 885 WP_003150714.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  BCBMB205_RS00085 (BCBMB205_00120) pdxT 19432..20022 (+) 591 WP_007615126.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  BCBMB205_RS00090 (BCBMB205_00130) serS 20342..21619 (+) 1278 WP_032872141.1 serine--tRNA ligase -
  BCBMB205_RS00095 (BCBMB205_00140) - 21630..22775 (-) 1146 WP_032872144.1 glycerate kinase -
  BCBMB205_RS00105 (BCBMB205_00160) dck 23216..23869 (-) 654 WP_007615132.1 deoxyadenosine/deoxycytidine kinase -
  BCBMB205_RS00110 (BCBMB205_00170) dgk 23866..24489 (-) 624 WP_014416710.1 deoxyguanosine kinase -
  BCBMB205_RS00115 (BCBMB205_00180) - 24585..25868 (-) 1284 WP_032872147.1 LysM peptidoglycan-binding domain-containing protein -
  BCBMB205_RS00120 (BCBMB205_00190) - 25940..26452 (-) 513 WP_044803089.1 isochorismatase family cysteine hydrolase -
  BCBMB205_RS00125 (BCBMB205_00200) - 26574..27009 (+) 436 Protein_18 nucleoside deaminase -
  BCBMB205_RS00135 (BCBMB205_00220) dnaX 27492..29183 (+) 1692 WP_032872149.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42430.36 Da        Isoelectric Point: 7.0882

>NTDB_id=174510 BCBMB205_RS00020 WP_007409910.1 2947..4059(+) (recF) [Bacillus velezensis strain CBMB205]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=174510 BCBMB205_RS00020 WP_007409910.1 2947..4059(+) (recF) [Bacillus velezensis strain CBMB205]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGAGAAAATGCCCAAGGCAAAACCAATTTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAGTCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGTAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943

Multiple sequence alignment