Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A2G56_RS08725 Genome accession   NZ_CP014835
Coordinates   1906630..1907991 (+) Length   453 a.a.
NCBI ID   WP_062711614.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1901630..1912991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS08695 - 1902397..1903185 (-) 789 WP_062711599.1 formate/nitrite transporter family protein -
  A2G56_RS08700 - 1903276..1904523 (-) 1248 WP_062711601.1 NAD(P)H-dependent oxidoreductase -
  A2G56_RS08705 - 1904540..1905145 (-) 606 WP_062711606.1 NADPH-dependent FMN reductase -
  A2G56_RS08710 - 1905328..1905687 (+) 360 WP_062711608.1 YbaN family protein -
  A2G56_RS08715 - 1905795..1906082 (+) 288 WP_237334407.1 MarR family transcriptional regulator -
  A2G56_RS08720 - 1906165..1906614 (+) 450 WP_062711611.1 dUTP diphosphatase -
  A2G56_RS08725 radA 1906630..1907991 (+) 1362 WP_062711614.1 DNA repair protein RadA Machinery gene
  A2G56_RS08730 rlmB 1908682..1909431 (+) 750 WP_062712534.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  A2G56_RS08735 - 1909453..1909968 (+) 516 WP_062711617.1 NYN domain-containing protein -
  A2G56_RS08740 - 1910090..1910950 (+) 861 WP_062711620.1 DegV family protein -
  A2G56_RS08745 rplM 1911122..1911568 (+) 447 WP_062711623.1 50S ribosomal protein L13 -
  A2G56_RS08750 rpsI 1911595..1911987 (+) 393 WP_062711625.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49475.78 Da        Isoelectric Point: 6.5084

>NTDB_id=174497 A2G56_RS08725 WP_062711614.1 1906630..1907991(+) (radA) [Streptococcus halotolerans strain HTS9]
MAKKKSSFVCQECGYNSPKYLGRCPNCSAWSSFVEEVEVQEVKNARISLTGEKARLTKLKDVTSIHYARTKTNMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLAHQGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMAHIRAEIE
KVHPDFLIIDSIQTIMSPEISSVQGSVSQVREVTAELMNLAKTNSIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLQGIDIPDNIQVVGVSTVGEVLKRVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=174497 A2G56_RS08725 WP_062711614.1 1906630..1907991(+) (radA) [Streptococcus halotolerans strain HTS9]
ATCGCAAAGAAAAAATCGAGTTTTGTATGCCAAGAATGTGGTTACAATTCCCCAAAATACCTAGGGCGCTGCCCCAATTG
CTCGGCTTGGTCGTCCTTTGTCGAAGAAGTAGAAGTTCAAGAGGTTAAAAATGCTCGCATTAGCCTGACAGGTGAAAAAG
CACGCCTAACGAAGCTCAAAGATGTGACTTCTATCCATTATGCTCGAACCAAAACAAATATGGATGAATTTAACCGCGTT
CTTGGTGGAGGTGTCGTTCCAGGCAGTTTGGTTTTGATCGGTGGGGATCCTGGTATTGGGAAGTCGACACTTCTCTTGCA
AGTATCGACTCAACTAGCTCATCAAGGAACTGTGTTATATGTTTCAGGAGAAGAATCAGCTGAGCAGATCAAATTGCGCA
GTGAGCGCTTAGGTGATATTGACAATGAATTTTACCTCTATGCTGAGACGAATATGGCACATATCCGCGCAGAGATCGAG
AAGGTGCATCCAGATTTCCTTATTATCGATTCTATCCAAACCATCATGAGTCCAGAGATTTCTAGTGTGCAAGGTTCGGT
TTCGCAAGTTCGGGAAGTAACGGCAGAGTTGATGAACCTAGCTAAAACGAATAGTATCGCAACGTTTATCGTTGGACACG
TTACTAAAGAAGGAACGCTGGCTGGTCCTCGCATGTTAGAGCACATGGTGGATACCGTGCTTTATTTTGAAGGAGAACGC
CATCACACTTTCCGTATTCTACGTGCTGTTAAAAATCGCTTTGGTTCAACGAATGAAATTGGGATTTTTGAGATGCAATC
AGGCGGTTTGGTCGAAGTTCTCAACCCTAGTCAGGTCTTTTTGGAGGAGCGTTTGGACGGGGCGACAGGTTCGGCTATCG
TTGTGACTATGGAAGGAACCCGTCCAATTTTGGCAGAGGTCCAGGCTCTTGTGACGCCGACGGTTTTTGGAAATGCTAAA
CGTACAACTACGGGTCTTGATTTTAATCGAGTGAGCTTGATTATGGCTGTTCTTGAAAAACGATGTGGTTTGCTCTTGCA
AAATCAAGATGCTTACCTTAAGTCAGCTGGCGGTGTCAAGCTAGATGAGCCAGCTATTGACCTAGCTGTCGCAGTAGCAA
TTGCTTCTAGCTATAAAGAAAAACCGACCAGCCCACAAGAAGCTTTTATCGGAGAAATTGGATTGACTGGTGAGATTCGT
CGTGTGACTCGTATTGAACAACGAATCAACGAAGCGGCTAAACTGGGTTTTACCAAGATCTATGCTCCTAAAAATTCATT
ACAAGGCATTGATATTCCAGATAATATTCAGGTTGTTGGTGTTTCAACCGTTGGAGAGGTTTTGAAGAGAGTGTTCGCTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

87.638

100

0.876
  radA Streptococcus pneumoniae D39

87.638

100

0.876
  radA Streptococcus pneumoniae R6

87.638

100

0.876
  radA Streptococcus pneumoniae TIGR4

87.638

100

0.876
  radA Streptococcus mitis SK321

87.638

100

0.876
  radA Streptococcus mitis NCTC 12261

87.417

100

0.874
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

100

0.625

Multiple sequence alignment