Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   A2G56_RS08065 Genome accession   NZ_CP014835
Coordinates   1752328..1753044 (-) Length   238 a.a.
NCBI ID   WP_062711269.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1747328..1758044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS08045 dtd 1748264..1748707 (+) 444 WP_062711258.1 D-aminoacyl-tRNA deacylase -
  A2G56_RS08050 - 1748726..1749043 (+) 318 WP_237334406.1 hypothetical protein -
  A2G56_RS08055 - 1749187..1750827 (-) 1641 WP_062711263.1 phosphoenolpyruvate carboxykinase (ATP) -
  A2G56_RS08060 - 1751019..1752161 (+) 1143 WP_062711266.1 glycerate kinase -
  A2G56_RS08065 treR 1752328..1753044 (-) 717 WP_062711269.1 trehalose operon repressor Regulator
  A2G56_RS08070 treP 1753243..1755282 (+) 2040 WP_062711271.1 PTS system trehalose-specific EIIBC component -
  A2G56_RS08075 - 1755300..1755914 (+) 615 WP_082785130.1 sugar O-acetyltransferase -
  A2G56_RS08080 treC 1755959..1757584 (+) 1626 WP_062711275.1 alpha,alpha-phosphotrehalase -

Sequence


Protein


Download         Length: 238 a.a.        Molecular weight: 27317.20 Da        Isoelectric Point: 7.6049

>NTDB_id=174496 A2G56_RS08065 WP_062711269.1 1752328..1753044(-) (treR) [Streptococcus halotolerans strain HTS9]
MKKYEKVFRNLEAAINQGTYQVNDYLPTEEDLAQQFSVSRDTIRKALKLLAQHGLIQKRQGSGSQIIKHERINFPVSTLT
SFQEIAQAQGMTTTTNVIAIDKLIIDGKLSELTGFPPKSHVWRITRQRVMEGVASVLDIDYLLTTFVPEIDRSIAEKSIY
DYLENHLHLMIDLAEKEITIDQTNQQDSILLDLAGEHHVVSIKSKVFLTNGQQFQFTESRHKLDKFRFVDFAKRRPAN

Nucleotide


Download         Length: 717 bp        

>NTDB_id=174496 A2G56_RS08065 WP_062711269.1 1752328..1753044(-) (treR) [Streptococcus halotolerans strain HTS9]
ATGAAAAAATACGAGAAAGTTTTCCGAAATTTAGAAGCTGCTATTAATCAAGGAACCTATCAGGTTAATGATTATTTACC
AACTGAAGAAGATCTGGCTCAGCAATTTTCTGTTAGCCGCGATACCATTCGAAAAGCCTTGAAACTCCTTGCACAACACG
GCCTCATTCAAAAACGTCAAGGCAGTGGCTCACAAATTATCAAACATGAACGGATTAATTTTCCTGTCTCAACCTTGACC
AGTTTCCAAGAAATTGCGCAAGCACAAGGGATGACAACAACCACTAATGTCATTGCCATTGATAAACTCATCATTGATGG
GAAATTGTCAGAGTTAACAGGTTTTCCACCCAAGAGTCATGTTTGGCGCATCACGCGCCAACGTGTGATGGAAGGCGTGG
CCTCTGTTCTTGACATTGACTATTTGCTGACCACATTTGTTCCGGAAATAGATCGTTCGATTGCGGAAAAGTCTATTTAT
GATTATTTAGAAAATCACTTACACCTCATGATTGATCTAGCAGAAAAAGAGATTACTATCGATCAGACCAACCAGCAGGA
CAGTATTCTTTTAGATCTTGCTGGTGAGCATCATGTCGTCTCCATCAAATCCAAAGTCTTTCTGACTAATGGTCAACAAT
TTCAATTCACCGAAAGCCGCCATAAATTGGATAAATTTAGATTTGTGGATTTTGCCAAGAGAAGACCAGCCAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.53

98.319

0.634


Multiple sequence alignment