Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   A2G56_RS03815 Genome accession   NZ_CP014835
Coordinates   860993..861886 (-) Length   297 a.a.
NCBI ID   WP_062709264.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 855993..866886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS03800 pheT 856189..858594 (-) 2406 WP_062709258.1 phenylalanine--tRNA ligase subunit beta -
  A2G56_RS11150 - 858820..859107 (-) 288 Protein_774 GNAT family N-acetyltransferase -
  A2G56_RS03810 pheS 859420..860466 (-) 1047 WP_062709261.1 phenylalanine--tRNA ligase subunit alpha -
  A2G56_RS03815 endA 860993..861886 (-) 894 WP_062709264.1 DNA/RNA non-specific endonuclease Machinery gene
  A2G56_RS03820 - 861920..862108 (-) 189 WP_062709268.1 DNA-directed RNA polymerase subunit beta -
  A2G56_RS03825 murA 862110..863378 (-) 1269 WP_062709271.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  A2G56_RS03830 - 863421..863657 (-) 237 WP_157761193.1 DUF1146 family protein -
  A2G56_RS03835 - 864139..864558 (-) 420 WP_062709277.1 F0F1 ATP synthase subunit epsilon -
  A2G56_RS03840 atpD 864571..865977 (-) 1407 WP_062709279.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32056.71 Da        Isoelectric Point: 9.9945

>NTDB_id=174460 A2G56_RS03815 WP_062709264.1 860993..861886(-) (endA) [Streptococcus halotolerans strain HTS9]
MAKPYYSKKSSKSAISLLAVILTLVLGLVAGNDKLPDDNPLKQLAQVVTNASNQEKARSNGSSANELTPSQELAQSVLTP
SVKKLLGSNIKWNGAGAFIINDNKTNLDANVSSVPYVDNKTKQVQGEVVPTVANAMLSKQSRQYRDREATGNGSTSWKPA
GWHQVHGLPGGYDHAIDRGHLIGYALAGNIKGFDPSASNPKNIAVQTAWSNQARSHASTGQNYFETQIRRALDNNKRVRY
RVTLVYDGDNILASGSHLEAKSSDGSLEFNVFVPNVQSGITLNYRNGQVTVNNSFSD

Nucleotide


Download         Length: 894 bp        

>NTDB_id=174460 A2G56_RS03815 WP_062709264.1 860993..861886(-) (endA) [Streptococcus halotolerans strain HTS9]
ATGGCAAAACCTTATTATTCAAAAAAGTCATCTAAATCAGCTATTTCGCTTTTGGCGGTAATCCTCACCTTAGTTTTAGG
GCTTGTTGCTGGAAATGATAAACTTCCGGACGATAATCCTTTAAAGCAGTTGGCACAAGTTGTCACGAATGCGTCAAATC
AGGAGAAGGCGCGTTCTAATGGGTCAAGTGCCAATGAGTTAACACCGAGTCAAGAACTGGCACAGTCCGTTTTAACCCCT
TCTGTCAAAAAGCTATTGGGTTCCAATATAAAATGGAATGGAGCGGGAGCTTTTATCATAAACGATAATAAAACCAACTT
GGATGCCAATGTGTCGAGTGTGCCTTATGTTGATAATAAAACAAAGCAAGTTCAAGGAGAAGTTGTTCCGACTGTGGCTA
ATGCTATGCTTTCCAAACAAAGTCGTCAGTACCGCGATCGCGAAGCAACAGGAAATGGTTCGACTTCCTGGAAACCAGCT
GGTTGGCATCAGGTACATGGTTTGCCTGGCGGATACGATCACGCCATTGACAGAGGTCATTTGATTGGCTATGCGCTTGC
TGGTAATATCAAAGGCTTTGACCCTTCAGCAAGTAATCCTAAAAATATTGCCGTTCAAACGGCTTGGTCAAATCAAGCGA
GAAGCCATGCGTCGACCGGTCAAAATTATTTTGAGACACAAATTCGCCGCGCATTGGATAATAACAAGCGGGTTCGTTAC
CGTGTTACTCTGGTTTACGATGGTGATAATATTTTGGCATCAGGGTCACATCTTGAGGCAAAATCCAGTGATGGTAGTTT
AGAATTTAATGTTTTTGTCCCTAATGTTCAATCAGGTATTACATTGAACTATCGAAATGGACAAGTGACCGTTAATAACT
CATTTAGTGATTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.518

75.421

0.502
  endA Streptococcus pneumoniae D39

66.518

75.421

0.502
  endA Streptococcus pneumoniae R6

66.518

75.421

0.502
  endA Streptococcus pneumoniae TIGR4

66.518

75.421

0.502

Multiple sequence alignment