Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A1140_RS01095 Genome accession   NZ_CP014834
Coordinates   241234..242607 (+) Length   457 a.a.
NCBI ID   WP_103207172.1    Uniprot ID   -
Organism   Staphylococcus felis strain BN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 236234..247607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1140_RS01075 (A1140_01050) - 236573..237034 (+) 462 WP_103207167.1 CtsR family transcriptional regulator -
  A1140_RS01080 (A1140_01055) - 237165..237575 (+) 411 Protein_203 UvrB/UvrC motif-containing protein -
  A1140_RS01085 (A1140_01060) - 237568..238572 (+) 1005 WP_349421075.1 protein arginine kinase -
  A1140_RS01090 (A1140_01065) - 238588..241047 (+) 2460 WP_115855807.1 ATP-dependent Clp protease ATP-binding subunit -
  A1140_RS01095 (A1140_01070) radA 241234..242607 (+) 1374 WP_103207172.1 DNA repair protein RadA Machinery gene
  A1140_RS01100 (A1140_01075) - 242620..243687 (+) 1068 WP_349421076.1 PIN/TRAM domain-containing protein -
  A1140_RS01105 (A1140_01080) ispD 243684..244382 (+) 699 WP_349421077.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  A1140_RS01110 (A1140_01085) ispF 244375..244857 (+) 483 WP_103207175.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  A1140_RS01115 (A1140_01090) gltX 244932..246386 (+) 1455 WP_103207176.1 glutamate--tRNA ligase -
  A1140_RS01120 (A1140_01095) cysE 246842..247471 (+) 630 WP_174688364.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50330.95 Da        Isoelectric Point: 7.7464

>NTDB_id=174425 A1140_RS01095 WP_103207172.1 241234..242607(+) (radA) [Staphylococcus felis strain BN1]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNTLEESIMQKSAQPKHGVRAQKANVAKVQKLSDIKQEQSPRILTNSDEFN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSQHKRVLYITGEESLNQTKLRADRLDEDASQLNVFAETDLEIIHET
VKKVEPQLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLTEPAVDLGIVIATASSFQNKAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVILPQTNIGGWTYPEQIEVIGVTSVHEALQKAFKSK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=174425 A1140_RS01095 WP_103207172.1 241234..242607(+) (radA) [Staphylococcus felis strain BN1]
GTGGCAAAGAAAAAAGTCATATTTGAATGTACAGCGTGTGGGTATCAATCACCTAAGTGGATGGGCAAATGTCCTAATTG
TGGTGCGTGGAATACACTGGAAGAATCTATTATGCAAAAATCAGCACAGCCTAAACATGGTGTAAGGGCACAAAAGGCCA
ATGTAGCCAAAGTGCAAAAACTGAGCGACATTAAACAAGAACAGTCACCCCGAATTCTTACAAATAGTGATGAATTTAAT
CGTGTGCTTGGTGGAGGTATAGTAGAAGGATCACTCGTCTTAATTGGAGGCGATCCAGGTATTGGAAAGTCCACATTATT
GTTACAAATGTGTGCTGCACTTTCTCAGCATAAACGTGTTTTATATATTACCGGGGAAGAATCTTTAAATCAAACGAAAT
TACGTGCAGATCGGCTTGATGAAGATGCAAGTCAACTCAATGTATTTGCCGAAACAGATTTAGAAATCATACATGAAACA
GTGAAAAAAGTAGAGCCGCAACTGATTGTAGTGGACTCGATACAAACCATCTATCATCCAGAAATTAGTTCAGCACCTGG
ATCAGTTTCACAAGTTAGAGAGAGTACCCAAAGTTTAATGCATATCGCAAAGCAAATGAATATCGCTACGTTTATTGTGG
GGCATGTTACAAAAGAAGGTCAAATTGCAGGACCACGTTTACTTGAGCATATGGTCGACACAGTTTTGTATTTTGAAGGT
GACGAACATCATGCTTATCGAATATTACGTGCGGTTAAAAACCGCTTTGGCTCGACCAATGAAATGGGTATTTTTGAAAT
GAAGCAAACAGGTTTAAAAAGTGTGCCCAATCCATCTGAAATGTTTTTGGAAGAGCGCTCAACTAATGTCCCAGGTTCGA
CGATTGTAGCGACTATGGAAGGGACAAGACCACTTTTGATTGAAGTACAAGCGCTTGTGACTCCGACTACATTTAACAAT
CCAAGACGTATGGCCACGGGCATTGACCATAATCGATTAAGCTTATTAATGGCCGTGCTTGAAAAGAAAGAAGGCTATCT
CTTACAGCAGCAAGATGCTTATATAAAAGTAGCTGGTGGTGTCAAGTTAACTGAGCCTGCTGTTGATTTAGGGATTGTGA
TTGCAACAGCGTCTAGTTTTCAAAATAAAGCCGTTGATGGTTTAGACTGTTTTATAGGAGAGGTCGGTCTAACTGGTGAA
GTACGCCGTGTGTCACGAATAGAACAACGTGTTCAAGAAGCGGCCAAATTAGGATTTAAGCGTGTTATTTTACCACAAAC
CAATATTGGCGGTTGGACTTATCCAGAACAAATTGAAGTTATCGGTGTGACATCTGTTCACGAAGCACTTCAAAAAGCCT
TTAAATCAAAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.157

100

0.663
  radA Streptococcus pneumoniae Rx1

58.59

99.344

0.582
  radA Streptococcus pneumoniae D39

58.59

99.344

0.582
  radA Streptococcus pneumoniae R6

58.59

99.344

0.582
  radA Streptococcus pneumoniae TIGR4

58.59

99.344

0.582
  radA Streptococcus mitis NCTC 12261

58.59

99.344

0.582
  radA Streptococcus mitis SK321

58.59

99.344

0.582

Multiple sequence alignment