Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ATY39_RS12855 Genome accession   NZ_CP014806
Coordinates   2585653..2586603 (-) Length   316 a.a.
NCBI ID   WP_066791983.1    Uniprot ID   A0A143HI11
Organism   Rummeliibacillus stabekisii strain PP9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2580653..2591603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY39_RS12830 (ATY39_12830) - 2580772..2582019 (-) 1248 WP_066790362.1 YeeE/YedE family protein -
  ATY39_RS12835 (ATY39_12835) - 2582197..2582835 (-) 639 WP_066790364.1 phosphatase PAP2 family protein -
  ATY39_RS12840 (ATY39_12840) - 2582952..2583935 (-) 984 WP_066790366.1 siderophore ABC transporter substrate-binding protein -
  ATY39_RS12845 (ATY39_12845) - 2583952..2584713 (-) 762 WP_066790368.1 ABC transporter ATP-binding protein -
  ATY39_RS12850 (ATY39_12850) - 2584710..2585660 (-) 951 WP_066790370.1 iron chelate uptake ABC transporter family permease subunit -
  ATY39_RS12855 (ATY39_12855) ceuB 2585653..2586603 (-) 951 WP_066791983.1 ABC transporter permease Machinery gene
  ATY39_RS12860 (ATY39_12860) - 2586904..2588160 (+) 1257 WP_236717646.1 mechanosensitive ion channel -
  ATY39_RS12865 (ATY39_12865) - 2588311..2589798 (-) 1488 WP_066790372.1 peptide MFS transporter -
  ATY39_RS12870 (ATY39_12870) hflX 2590225..2591490 (-) 1266 WP_066790374.1 GTPase HflX -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34769.12 Da        Isoelectric Point: 10.3178

>NTDB_id=174407 ATY39_RS12855 WP_066791983.1 2585653..2586603(-) (ceuB) [Rummeliibacillus stabekisii strain PP9]
MKKRYLLIALVVLSLISLFVGVSDITPKDLLNLHSEKTQIFLISRVPRLVAIILAGFGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMAVSFVFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAYKSNVI
QNISTWLQGDFSMIMKGRYELLYISVPVLIIAYFYANRFTVAGMGEDFAKNLGLAYKRIVNFGLILVALVTTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLICDILGRVLIYPYEISISLMVGVIGSAVFLFLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=174407 ATY39_RS12855 WP_066791983.1 2585653..2586603(-) (ceuB) [Rummeliibacillus stabekisii strain PP9]
ATGAAAAAACGATATTTATTGATAGCACTTGTTGTGTTGTCTCTTATCTCTCTCTTTGTGGGGGTAAGTGATATCACACC
AAAGGACTTATTAAACTTACATTCAGAAAAGACACAAATTTTCCTCATCAGTCGCGTACCAAGATTGGTTGCGATTATTT
TGGCGGGCTTTGGGATGAGTATTGCAGGCTTAATTATGCAAAGTTTGAGCCGCAATAAATTCGTATCGCCTACAACGGCT
GGTACACTAGATGCTACTCGTTTGGGGATTCTTGTATCGATGCTGTTATTTGCAAACGCTTCGATGCTTGAAAAAATGGC
GGTATCCTTCGTATTTGCGCTTGCCGGCACATTATTATTTATGCAAATATTGGACCGCATTAAATTTAAAGATGCGATTT
TCATACCGCTTGTCGGATTGATGTTTGGGAATATATTGTCTTCTATCACGACGTTCTTTGCTTATAAGTCCAATGTCATC
CAAAATATCTCCACATGGCTACAAGGTGACTTCTCGATGATCATGAAAGGTCGCTACGAACTGCTTTATATTAGTGTGCC
TGTATTGATTATCGCCTACTTCTATGCCAACCGTTTTACAGTGGCTGGAATGGGTGAAGATTTCGCAAAAAACCTAGGGC
TTGCTTATAAACGTATCGTTAATTTCGGCTTAATCCTTGTTGCTTTAGTTACTACTACTGTTGTTTTAACAGTTGGTATG
ATTCCATTTTTAGGGTTGATCATTCCCAATATTGTCTCCATTTTTAAAGGAGATCACTTGCAAAAAACACTGCCACATAC
TGCGCTTTTAGGAGCTATATTCCTTTTAATCTGCGATATATTAGGCCGTGTCCTTATCTATCCATATGAGATTTCTATCA
GCTTAATGGTAGGCGTCATAGGCAGTGCAGTCTTCCTATTCTTGTTGTTTAGGGGGAAGGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143HI11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

99.051

0.535

Multiple sequence alignment