Detailed information NTG0174399

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BFL21_RS19510
• Genome accession: NZ_CP018243
• Coordinates: 3527343..3528335 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 350
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3522343..3533335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFL21_RS19485 (BFL21_19310)	pphB	3523705..3524361 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
BFL21_RS19490 (BFL21_19315)	-	3524402..3524638 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BFL21_RS19495 (BFL21_19320)	-	3524649..3526076 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BFL21_RS19500 (BFL21_19325)	-	3526076..3526669 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BFL21_RS19505 (BFL21_19330)	-	3526816..3527223 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
BFL21_RS19510 (BFL21_19335)	rpoS	3527343..3528335 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BFL21_RS19515 (BFL21_19340)	nlpD	3528398..3529492 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
BFL21_RS19520 (BFL21_19345)	pcm	3529677..3530303 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BFL21_RS19525 (BFL21_19350)	surE	3530297..3531058 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BFL21_RS19530 (BFL21_19355)	truD	3531039..3532088 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
BFL21_RS19535 (BFL21_19360)	ispF	3532085..3532564 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BFL21_RS19540 (BFL21_19365)	ispD	3532564..3533274 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=174399 BFL21_RS19510 WP_000081550.1 3527343..3528335(-) (rpoS) [Escherichia coli strain 350]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=174399 BFL21_RS19510 WP_000081550.1 3527343..3528335(-) (rpoS) [Escherichia coli strain 350]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715