Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ATY39_RS04960 Genome accession   NZ_CP014806
Coordinates   1017478..1019178 (+) Length   566 a.a.
NCBI ID   WP_066786686.1    Uniprot ID   A0A143HAW7
Organism   Rummeliibacillus stabekisii strain PP9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1012478..1024178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY39_RS04935 (ATY39_04935) - 1012737..1012979 (+) 243 WP_066786674.1 exodeoxyribonuclease VII small subunit -
  ATY39_RS04940 (ATY39_04940) - 1012976..1013860 (+) 885 WP_066786676.1 polyprenyl synthetase family protein -
  ATY39_RS04945 (ATY39_04945) dxs 1014182..1016092 (+) 1911 WP_066786679.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ATY39_RS04950 (ATY39_04950) - 1016089..1016910 (+) 822 WP_066786682.1 TlyA family RNA methyltransferase -
  ATY39_RS04955 (ATY39_04955) ahrC 1017008..1017457 (+) 450 WP_066786684.1 transcriptional regulator AhrC/ArgR -
  ATY39_RS04960 (ATY39_04960) recN 1017478..1019178 (+) 1701 WP_066786686.1 DNA repair protein RecN Machinery gene
  ATY39_RS04965 (ATY39_04965) - 1019299..1020258 (+) 960 WP_066786687.1 SpoIVB peptidase S55 domain-containing protein -
  ATY39_RS04970 (ATY39_04970) spo0A 1020547..1021338 (+) 792 WP_066786694.1 sporulation transcription factor Spo0A -
  ATY39_RS04975 (ATY39_04975) - 1021558..1023129 (+) 1572 WP_066786696.1 FapA family protein -
  ATY39_RS04980 (ATY39_04980) - 1023122..1023844 (+) 723 WP_066786699.1 glycerophosphodiester phosphodiesterase -
  ATY39_RS04985 (ATY39_04985) - 1023923..1024162 (-) 240 WP_066786703.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63529.17 Da        Isoelectric Point: 4.7645

>NTDB_id=174391 ATY39_RS04960 WP_066786686.1 1017478..1019178(+) (recN) [Rummeliibacillus stabekisii strain PP9]
MLKELSIKNFAIIEDLTVDFQEGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELEGLFTLSSSMHTAYSK
CAEAGIDIEEGSVILRRDLNDNGKSVCRVNGKLVPLSLLREIGATLIDIHGQHESQELMDDKHHLSLLDQFAGDQITDQK
MLYISQYEEYRLLKKELAAISVNEQQVAQKIDLFQFQIKEIDACKFVPNEEDELMEERRRLLNFNKIFEGASTAHETILG
ESKGLDWIGQAMSALEDVATVDESFNEYSEAVSNAFYNLQEAAFGVKNILDELEFDPERLNEVEQRLALIGSMKRKYGHT
LEEILSYREKIGEELASLLNRDENIQKKEQQLMTLQKTLQKTAEKLTSIRKIVGEQLSFSIMQQLRELYMEKAEFSVHFE
TLAPGQFDQYGVDRVVFYIATNIGEPPKPLTKIASGGELSRVMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKI
AAVSIHSQVLCISHLPQVAAMADHHYYIQKQEDAHRTFTSLTEIFDNDRIGEISRIMSGAEVTDLTFQHAKELIDIANER
KKTMHA

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=174391 ATY39_RS04960 WP_066786686.1 1017478..1019178(+) (recN) [Rummeliibacillus stabekisii strain PP9]
TTGTTAAAAGAACTGTCAATTAAAAATTTCGCTATTATTGAAGATCTGACGGTCGACTTTCAAGAAGGATTAACGGTCTT
GACTGGAGAAACTGGGGCAGGGAAGTCTATTATTATCGATGCTGTGCAACTTCTTGCAGGAGGGCGAGGATCTCAGGAAT
TTATTCGCCATGGGGCGAAAAAAGCCGAATTAGAAGGACTTTTTACCCTATCTTCATCGATGCATACAGCATATTCTAAA
TGTGCGGAAGCTGGCATTGATATAGAAGAAGGCTCGGTCATCCTTAGACGAGACTTAAATGATAACGGTAAAAGTGTTTG
CCGAGTCAACGGAAAACTTGTCCCACTATCATTACTTAGGGAAATAGGTGCAACATTAATCGACATTCACGGCCAGCATG
AAAGCCAAGAATTAATGGATGATAAGCATCACCTTTCGTTGCTTGATCAATTCGCAGGAGATCAAATTACAGATCAAAAA
ATGCTGTATATTTCGCAATACGAAGAATATCGCCTGTTGAAAAAGGAGCTTGCTGCGATTTCAGTTAATGAGCAACAAGT
GGCACAAAAAATTGATCTCTTTCAGTTTCAAATCAAAGAAATTGATGCATGCAAATTTGTGCCTAATGAAGAAGATGAAT
TAATGGAAGAACGGAGAAGACTGCTAAACTTCAACAAAATATTTGAAGGCGCAAGTACAGCGCACGAAACCATTTTAGGT
GAATCAAAAGGGCTTGATTGGATCGGCCAAGCTATGTCCGCATTAGAGGATGTCGCTACTGTTGACGAAAGCTTTAATGA
GTATTCAGAAGCTGTATCGAACGCATTTTACAATTTGCAAGAAGCTGCATTTGGAGTGAAAAATATTCTGGATGAGCTTG
AATTTGATCCAGAGAGGCTGAATGAAGTAGAGCAACGTTTAGCGCTTATTGGATCAATGAAGCGTAAATATGGGCATACT
TTAGAAGAAATTCTGTCGTATCGTGAAAAAATAGGCGAGGAATTGGCATCTCTCTTAAACAGAGATGAAAATATCCAAAA
AAAAGAACAGCAATTAATGACATTGCAAAAAACATTGCAAAAAACCGCCGAAAAACTAACAAGTATTCGCAAAATTGTAG
GGGAACAGTTGTCTTTTTCCATTATGCAGCAGTTACGTGAATTGTATATGGAAAAAGCTGAATTTAGTGTTCATTTTGAA
ACATTGGCTCCTGGTCAGTTTGATCAATATGGAGTTGACCGTGTTGTCTTTTATATTGCGACAAATATAGGAGAACCGCC
TAAACCATTGACGAAAATCGCGTCTGGCGGGGAACTTTCACGTGTCATGCTAGCGCTTAAAACGATTTTTTCTTCATCTA
ATGGTATTACTTCCATTATATTTGATGAAGTCGATACTGGCGTTAGCGGACGAGTTGCTCAAGCTATTGCTGAAAAAATT
GCAGCGGTTTCAATACATTCTCAGGTTTTATGTATTTCTCATTTGCCTCAAGTTGCCGCAATGGCTGATCATCATTATTA
TATCCAAAAGCAAGAAGATGCACACAGAACATTTACATCTTTGACTGAGATTTTTGATAATGATCGGATTGGTGAAATTA
GCAGAATTATGTCTGGCGCAGAAGTAACAGATCTGACTTTCCAACATGCTAAAGAATTGATCGACATTGCAAATGAAAGA
AAGAAAACAATGCATGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143HAW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.778

100

0.537

Multiple sequence alignment