Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ATY39_RS01505 Genome accession   NZ_CP014806
Coordinates   357830..359644 (+) Length   604 a.a.
NCBI ID   WP_066784792.1    Uniprot ID   A0A143H8Y2
Organism   Rummeliibacillus stabekisii strain PP9     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 352830..364644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY39_RS01485 (ATY39_01485) trpS 353314..354303 (-) 990 WP_066784785.1 tryptophan--tRNA ligase -
  ATY39_RS01490 (ATY39_01490) spxA 355086..355481 (+) 396 WP_066791827.1 transcriptional regulator SpxA -
  ATY39_RS01495 (ATY39_01495) mecA 355896..356555 (+) 660 WP_066784788.1 adaptor protein MecA -
  ATY39_RS01500 (ATY39_01500) - 356654..357769 (+) 1116 WP_066784790.1 competence protein CoiA -
  ATY39_RS01505 (ATY39_01505) pepF 357830..359644 (+) 1815 WP_066784792.1 oligoendopeptidase F Regulator
  ATY39_RS01510 (ATY39_01510) - 360174..360986 (-) 813 WP_066784793.1 DsbA family protein -
  ATY39_RS01515 (ATY39_01515) - 360983..361384 (-) 402 WP_066784795.1 globin -
  ATY39_RS01520 (ATY39_01520) - 361576..362370 (-) 795 WP_084246852.1 lytic transglycosylase domain-containing protein -
  ATY39_RS01525 (ATY39_01525) - 362443..363021 (-) 579 WP_066784800.1 CYTH domain-containing protein -
  ATY39_RS01530 (ATY39_01530) - 363235..363621 (+) 387 WP_066784806.1 hypothetical protein -
  ATY39_RS01535 (ATY39_01535) - 363642..364322 (+) 681 WP_066784810.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69660.28 Da        Isoelectric Point: 4.7270

>NTDB_id=174385 ATY39_RS01505 WP_066784792.1 357830..359644(+) (pepF) [Rummeliibacillus stabekisii strain PP9]
MTEKTKVLTREEVPEELTWKLEDIFQSNADWETSYQELTELAKQASQYQGTIAEGSDALLKALRFRDEVYTKLGKLYAYS
HMRNDQDTTNSTYQAMDSRAKTLYAKVSTSLSFLTPEILALDEAVIKEYLKENKDLQLYTHELEEINNERPHILPAEQEA
LLSQMSEVTGASSNTFSMLNNADLEFPTVRDEEGNEVQLTHGNYVHFLESKDRSVREAAFRAMYKTYGDFKNTFAATLSG
NVKAHNVNAEIRHYDSARQAAMSANHIPEKVYDQLLETIHKYLPLMHRYIALRKKMLQVDELHMWDVYTPLVAESKIDMT
YDEAKEHMLKSLSVMGDEYVGIVEQALKDRWVDVLESKGKRSGAYSSGSYGTNPYILMNWQNNLDNLFTLVHEFGHSVHS
YFTRNNQPFVYGDYSIFVAEVASTCNEELLNDYLLKTIDDPKTRIYILNHWLEGFRGTIIRQTMFAEFEHIIHQMDQKGE
ALTADRMTEVYYELNKKYFGDDMVVDEEIGLEWARIPHFYYNYYVYQYATGKSAAIALSSQILSEGKPAVERYINEFLKA
GCSDYPINVLKAAGVDMESASPIEEACKVFERNLEELEKLLSEQ

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=174385 ATY39_RS01505 WP_066784792.1 357830..359644(+) (pepF) [Rummeliibacillus stabekisii strain PP9]
ATGACAGAAAAAACAAAAGTACTTACAAGAGAAGAAGTACCAGAGGAATTAACATGGAAATTGGAAGATATTTTTCAGTC
AAATGCTGATTGGGAAACTTCTTATCAAGAATTAACAGAATTGGCGAAACAGGCTTCGCAATATCAAGGTACTATTGCTG
AAGGATCGGATGCATTGCTTAAAGCCCTTCGTTTCCGCGATGAAGTTTATACTAAGCTTGGAAAGCTTTATGCATATTCT
CATATGCGCAATGACCAAGATACAACGAATTCCACATACCAAGCTATGGACAGTCGCGCTAAAACATTATATGCAAAAGT
TTCTACAAGCCTGTCTTTCTTGACGCCAGAAATTTTAGCGTTGGATGAAGCGGTAATTAAAGAATACTTGAAAGAAAATA
AGGATCTCCAATTATATACACATGAATTAGAAGAAATTAATAATGAACGTCCTCATATTTTGCCAGCAGAGCAAGAGGCA
TTGCTTTCGCAAATGTCTGAGGTAACGGGCGCTTCTTCTAATACCTTTAGTATGCTGAACAATGCAGACCTGGAATTCCC
TACTGTACGTGATGAAGAAGGTAATGAGGTTCAATTAACTCATGGCAACTATGTTCATTTCTTGGAAAGCAAAGATCGCT
CAGTCCGTGAGGCTGCATTCCGTGCGATGTACAAAACGTATGGAGATTTTAAAAATACGTTTGCAGCAACGTTATCAGGC
AATGTGAAAGCTCATAATGTGAATGCTGAAATTCGCCATTATGATTCTGCCCGCCAAGCTGCTATGAGCGCAAATCATAT
TCCAGAAAAAGTATACGATCAATTGCTTGAAACTATACACAAGTATTTACCGTTAATGCACCGCTACATTGCATTGCGCA
AAAAAATGCTTCAGGTGGATGAATTGCATATGTGGGATGTCTATACACCACTTGTCGCTGAATCAAAAATTGATATGACA
TATGACGAAGCCAAGGAACATATGCTCAAATCCTTAAGTGTGATGGGTGATGAGTATGTAGGTATCGTTGAGCAAGCTTT
AAAAGATCGCTGGGTGGATGTTTTAGAAAGCAAAGGCAAACGCAGCGGGGCTTATTCATCAGGTTCTTACGGAACAAATC
CATACATTCTGATGAACTGGCAAAACAATCTGGATAACTTGTTCACACTTGTGCATGAATTTGGACATAGTGTCCACAGT
TATTTCACACGCAACAATCAACCGTTCGTGTACGGTGATTATTCAATTTTTGTGGCAGAGGTAGCATCCACATGTAATGA
AGAATTGTTAAATGACTACTTGCTGAAAACAATTGATGATCCAAAAACAAGAATTTATATCTTGAATCATTGGCTTGAAG
GTTTCCGTGGCACCATTATTCGTCAAACAATGTTTGCAGAATTTGAGCATATTATTCATCAAATGGACCAAAAAGGTGAA
GCTTTAACTGCTGATCGTATGACTGAAGTATACTATGAGTTAAATAAGAAATATTTTGGTGACGACATGGTCGTAGATGA
AGAAATCGGCTTGGAATGGGCTCGCATTCCACACTTCTACTACAACTATTATGTGTATCAATATGCAACAGGTAAAAGTG
CTGCGATTGCATTAAGTTCTCAAATTTTATCAGAGGGCAAACCAGCTGTAGAGCGCTATATCAATGAGTTCCTAAAAGCA
GGCTGCTCAGATTATCCTATCAATGTGTTAAAAGCTGCTGGCGTTGATATGGAATCTGCATCCCCAATTGAAGAAGCATG
TAAAGTGTTCGAGCGAAACTTAGAAGAATTAGAAAAGCTATTGTCAGAACAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(208-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143H8Y2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.324

98.013

0.483

Multiple sequence alignment