Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BaDB11_RS20600 Genome accession   NZ_CP014795
Coordinates   3952945..3953535 (+) Length   196 a.a.
NCBI ID   WP_003181328.1    Uniprot ID   A0A1Y0YEF8
Organism   Bacillus licheniformis strain SCK B11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3947945..3958535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS20570 (BaDB11_04140) - 3948251..3948703 (+) 453 WP_371268796.1 flavodoxin -
  BaDB11_RS20575 (BaDB11_04141) dapD 3948809..3949519 (+) 711 WP_003181319.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BaDB11_RS20580 (BaDB11_04142) - 3949588..3950712 (+) 1125 WP_003181321.1 N-acetyldiaminopimelate deacetylase -
  BaDB11_RS20585 (BaDB11_04143) - 3950775..3951020 (+) 246 WP_003181323.1 YkuS family protein -
  BaDB11_RS20590 (BaDB11_04144) ahpA 3951315..3951857 (+) 543 WP_003181325.1 biofilm-specific peroxidase AhpA -
  BaDB11_RS20595 (BaDB11_04145) - 3951939..3952397 (+) 459 WP_003181327.1 TlpA family protein disulfide reductase -
  BaDB11_RS20600 (BaDB11_04146) rok 3952945..3953535 (+) 591 WP_003181328.1 transcriptional regulator Rok Regulator
  BaDB11_RS20605 (BaDB11_04147) - 3953681..3954637 (-) 957 WP_003181329.1 hypothetical protein -
  BaDB11_RS20610 (BaDB11_04148) mobA 3954790..3955377 (+) 588 WP_016886580.1 molybdenum cofactor guanylyltransferase -
  BaDB11_RS20615 (BaDB11_04149) - 3955483..3956496 (+) 1014 WP_011197943.1 molybdopterin-synthase adenylyltransferase MoeB -
  BaDB11_RS20620 (BaDB11_04150) glp 3956516..3957808 (+) 1293 WP_003181335.1 gephyrin-like molybdotransferase Glp -
  BaDB11_RS20625 (BaDB11_04151) mobB 3957775..3958302 (+) 528 WP_003181336.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22665.62 Da        Isoelectric Point: 9.9960

>NTDB_id=174355 BaDB11_RS20600 WP_003181328.1 3952945..3953535(+) (rok) [Bacillus licheniformis strain SCK B11]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=174355 BaDB11_RS20600 WP_003181328.1 3952945..3953535(+) (rok) [Bacillus licheniformis strain SCK B11]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAACGAGGCTGAAGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAACATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACTGAATCTCTCCCTGTTTTAGCTGAATTGGCTGCACAGGAGATGAAGAGCTACCAGCAACAGCAG
CAACAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGA
TGGAACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAATTGCGTGAAGCGGCGATTAAAACAT
TAAAACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAAT
ATGACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGAGATTTCTACTGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YEF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.77

97.449

0.816

Multiple sequence alignment