Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | BFL24_RS25140 | Genome accession | NZ_CP018241 |
| Coordinates | 4586800..4587276 (+) | Length | 158 a.a. |
| NCBI ID | WP_001535682.1 | Uniprot ID | - |
| Organism | Escherichia coli strain 319 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 4581800..4592276
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFL24_RS25110 (BFL24_24885) | - | 4581921..4584767 (+) | 2847 | WP_000820574.1 | Ag43/Cah family autotransporter adhesin | - |
| BFL24_RS25115 (BFL24_24890) | - | 4584838..4585033 (+) | 196 | Protein_4486 | DUF905 family protein | - |
| BFL24_RS25125 (BFL24_24900) | - | 4585151..4585969 (+) | 819 | WP_001535681.1 | DUF932 domain-containing protein | - |
| BFL24_RS25135 (BFL24_24910) | - | 4586311..4586784 (+) | 474 | WP_000855064.1 | antirestriction protein | - |
| BFL24_RS25140 (BFL24_24915) | radC | 4586800..4587276 (+) | 477 | WP_001535682.1 | RadC family protein | Machinery gene |
| BFL24_RS25145 (BFL24_24920) | - | 4587339..4587560 (+) | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| BFL24_RS25155 (BFL24_24930) | - | 4587723..4588100 (+) | 378 | WP_001390338.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| BFL24_RS25160 (BFL24_24935) | - | 4588147..4588524 (+) | 378 | WP_001094437.1 | TA system toxin CbtA family protein | - |
| BFL24_RS25165 (BFL24_24940) | - | 4588521..4589009 (+) | 489 | WP_053920163.1 | DUF5983 family protein | - |
| BFL24_RS25170 (BFL24_24945) | - | 4589029..4589226 (+) | 198 | WP_000772032.1 | DUF957 domain-containing protein | - |
| BFL24_RS25175 (BFL24_24950) | - | 4589311..4590156 (+) | 846 | WP_001274561.1 | DUF4942 domain-containing protein | - |
| BFL24_RS25180 (BFL24_24955) | - | 4590440..4590820 (+) | 381 | WP_001171554.1 | transposase | - |
| BFL24_RS25185 (BFL24_24960) | tnpB | 4590817..4591164 (+) | 348 | WP_000612591.1 | IS66 family insertion sequence element accessory protein TnpB | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17640.20 Da Isoelectric Point: 6.9240
>NTDB_id=174337 BFL24_RS25140 WP_001535682.1 4586800..4587276(+) (radC) [Escherichia coli strain 319]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLAQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLAQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=174337 BFL24_RS25140 WP_001535682.1 4586800..4587276(+) (radC) [Escherichia coli strain 319]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGCACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGCACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |