Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | BaDB11_RS12870 | Genome accession | NZ_CP014795 |
| Coordinates | 2443863..2444153 (-) | Length | 96 a.a. |
| NCBI ID | WP_085959887.1 | Uniprot ID | - |
| Organism | Bacillus licheniformis strain SCK B11 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2438863..2449153
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BaDB11_RS12830 (BaDB11_02586) | - | 2438887..2439216 (+) | 330 | WP_003178156.1 | cyclic-di-AMP receptor | - |
| BaDB11_RS12835 (BaDB11_02587) | - | 2439228..2439668 (+) | 441 | WP_003178158.1 | YaaR family protein | - |
| BaDB11_RS12840 (BaDB11_02588) | holB | 2439680..2440669 (+) | 990 | WP_003178160.1 | DNA polymerase III subunit delta' | - |
| BaDB11_RS12845 (BaDB11_02589) | - | 2440672..2441499 (+) | 828 | WP_003178162.1 | PSP1 domain-containing protein | - |
| BaDB11_RS12850 (BaDB11_02590) | yabA | 2441514..2441876 (+) | 363 | WP_003178164.1 | DNA replication initiation control protein YabA | - |
| BaDB11_RS12855 (BaDB11_02591) | - | 2441941..2442684 (+) | 744 | WP_003178166.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| BaDB11_RS12860 (BaDB11_02592) | - | 2442671..2442964 (+) | 294 | WP_003178169.1 | GIY-YIG nuclease family protein | - |
| BaDB11_RS12865 (BaDB11_02593) | rsmI | 2442939..2443814 (+) | 876 | WP_025805862.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| BaDB11_RS12870 (BaDB11_02594) | abrB | 2443863..2444153 (-) | 291 | WP_085959887.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| BaDB11_RS12875 (BaDB11_02595) | metG | 2444661..2446649 (+) | 1989 | WP_017474309.1 | methionine--tRNA ligase | - |
| BaDB11_RS12880 (BaDB11_02596) | - | 2446734..2447501 (+) | 768 | WP_017474310.1 | TatD family hydrolase | - |
| BaDB11_RS12885 (BaDB11_02597) | - | 2447618..2448943 (+) | 1326 | WP_003178178.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10680.43 Da Isoelectric Point: 5.1848
>NTDB_id=174329 BaDB11_RS12870 WP_085959887.1 2443863..2444153(-) (abrB) [Bacillus licheniformis strain SCK B11]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=174329 BaDB11_RS12870 WP_085959887.1 2443863..2444153(-) (abrB) [Bacillus licheniformis strain SCK B11]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
93.75 |
100 |
0.938 |