Detailed information NTG0174327

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BaDB11_RS12625
• Genome accession: NZ_CP014795
• Coordinates: 2398111..2399223 (+)
• Length: 370 a.a.
• NCBI ID: WP_003178089.1
• Uniprot ID: A0A415J9T0
• Organism: Bacillus licheniformis strain SCK B11
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2393111..2404223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BaDB11_RS12600 (BaDB11_02543)	rnpA	2393840..2394199 (-)	360	WP_003178055.1	ribonuclease P protein component	-
BaDB11_RS12605	rpmH	2394284..2394418 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
BaDB11_RS12610 (BaDB11_02544)	dnaA	2395058..2396398 (+)	1341	WP_003178077.1	chromosomal replication initiator protein DnaA	-
BaDB11_RS12615 (BaDB11_02545)	dnaN	2396575..2397711 (+)	1137	WP_003178080.1	DNA polymerase III subunit beta	-
BaDB11_RS12620 (BaDB11_02546)	yaaA	2397879..2398094 (+)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
BaDB11_RS12625 (BaDB11_02547)	recF	2398111..2399223 (+)	1113	WP_003178089.1	DNA replication/repair protein RecF	Machinery gene
BaDB11_RS12630	remB	2399241..2399483 (+)	243	WP_003178090.1	extracellular matrix regulator RemB	-
BaDB11_RS12635 (BaDB11_02548)	gyrB	2399543..2401456 (+)	1914	WP_009330043.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
BaDB11_RS12640 (BaDB11_02549)	gyrA	2401647..2404115 (+)	2469	WP_003178095.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=174327 BaDB11_RS12625 WP_003178089.1 2398111..2399223(+) (recF) [Bacillus licheniformis strain SCK B11]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=174327 BaDB11_RS12625 WP_003178089.1 2398111..2399223(+) (recF) [Bacillus licheniformis strain SCK B11]
TTGTATATCCAAAATCTTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTACTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A415J9T0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.13	99.459	0.886