Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BaDB11_RS04700 Genome accession   NZ_CP014795
Coordinates   839046..839675 (-) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis strain SCK B11     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 834046..844675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS04675 (BaDB11_00947) rpsT 834260..834526 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  BaDB11_RS04680 (BaDB11_00948) holA 834588..835631 (-) 1044 WP_025804972.1 DNA polymerase III subunit delta -
  BaDB11_RS04685 (BaDB11_00949) - 835861..835992 (+) 132 WP_003183686.1 YqzM family protein -
  BaDB11_RS04690 (BaDB11_00950) - 836017..838404 (-) 2388 WP_075218365.1 DNA internalization-related competence protein ComEC/Rec2 -
  BaDB11_RS04695 (BaDB11_00951) - 838408..838977 (-) 570 WP_003183690.1 ComE operon protein 2 -
  BaDB11_RS04700 (BaDB11_00952) comEA 839046..839675 (-) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  BaDB11_RS04705 (BaDB11_00953) comER 839759..840580 (+) 822 WP_009327864.1 late competence protein ComER -
  BaDB11_RS04710 (BaDB11_00954) - 840650..841405 (-) 756 WP_011198132.1 class I SAM-dependent DNA methyltransferase -
  BaDB11_RS04715 (BaDB11_00955) rsfS 841402..841758 (-) 357 WP_003183699.1 ribosome silencing factor -
  BaDB11_RS04720 (BaDB11_00956) yqeK 841772..842335 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BaDB11_RS04725 (BaDB11_00957) - 842325..842894 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  BaDB11_RS04730 (BaDB11_00958) yhbY 842913..843203 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  BaDB11_RS04735 (BaDB11_00959) aroE 843197..844033 (-) 837 WP_003183706.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=174301 BaDB11_RS04700 WP_003183693.1 839046..839675(-) (comEA) [Bacillus licheniformis strain SCK B11]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=174301 BaDB11_RS04700 WP_003183693.1 839046..839675(-) (comEA) [Bacillus licheniformis strain SCK B11]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526

Multiple sequence alignment