Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   B34_RS23290 Genome accession   NZ_CP014793
Coordinates   4452857..4453447 (+) Length   196 a.a.
NCBI ID   WP_003181328.1    Uniprot ID   A0A1Y0YEF8
Organism   Bacillus licheniformis strain SCDB 34     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4447857..4458447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS23260 (B34_04707) - 4448163..4448615 (+) 453 WP_369878864.1 flavodoxin -
  B34_RS23265 (B34_04708) dapD 4448721..4449431 (+) 711 WP_003181319.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  B34_RS23270 (B34_04709) - 4449500..4450624 (+) 1125 WP_003181321.1 N-acetyldiaminopimelate deacetylase -
  B34_RS23275 (B34_04710) - 4450687..4450932 (+) 246 WP_003181323.1 YkuS family protein -
  B34_RS23280 (B34_04711) ahpA 4451227..4451769 (+) 543 WP_003181325.1 biofilm-specific peroxidase AhpA -
  B34_RS23285 (B34_04712) - 4451851..4452309 (+) 459 WP_003181327.1 TlpA family protein disulfide reductase -
  B34_RS23290 (B34_04713) rok 4452857..4453447 (+) 591 WP_003181328.1 transcriptional regulator Rok Regulator
  B34_RS23295 (B34_04714) - 4453593..4454549 (-) 957 WP_003181329.1 hypothetical protein -
  B34_RS23300 (B34_04715) mobA 4454702..4455289 (+) 588 WP_016886580.1 molybdenum cofactor guanylyltransferase -
  B34_RS23305 (B34_04716) - 4455395..4456408 (+) 1014 WP_025805761.1 molybdopterin-synthase adenylyltransferase MoeB -
  B34_RS23310 (B34_04717) glp 4456428..4457720 (+) 1293 WP_003181335.1 gephyrin-like molybdotransferase Glp -
  B34_RS23315 (B34_04718) mobB 4457687..4458214 (+) 528 WP_073425595.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22665.62 Da        Isoelectric Point: 9.9960

>NTDB_id=174215 B34_RS23290 WP_003181328.1 4452857..4453447(+) (rok) [Bacillus licheniformis strain SCDB 34]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=174215 B34_RS23290 WP_003181328.1 4452857..4453447(+) (rok) [Bacillus licheniformis strain SCDB 34]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAACGAGGCTGAAGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAACATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACTGAATCTCTCCCTGTTTTAGCTGAATTGGCTGCACAGGAGATGAAGAGCTACCAGCAACAGCAG
CAACAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGA
TGGAACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAATTGCGTGAAGCGGCGATTAAAACAT
TAAAACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAAT
ATGACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGAGATTTCTACTGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YEF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.77

97.449

0.816

Multiple sequence alignment