Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   B34_RS16835 Genome accession   NZ_CP014793
Coordinates   3188041..3188487 (-) Length   148 a.a.
NCBI ID   WP_003178810.1    Uniprot ID   A0A8B5YEZ5
Organism   Bacillus licheniformis strain SCDB 34     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3183041..3193487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS16810 (B34_03403) - 3183648..3184523 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  B34_RS16815 (B34_03404) - 3184707..3185258 (+) 552 WP_061575968.1 NAD(P)H-dependent oxidoreductase -
  B34_RS16820 (B34_03405) - 3185355..3186080 (+) 726 WP_003178804.1 AAA family ATPase -
  B34_RS16825 (B34_03406) - 3186150..3187586 (+) 1437 WP_003178806.1 glycoside hydrolase family 1 protein -
  B34_RS16830 (B34_03407) nin/comJ 3187625..3188023 (-) 399 WP_003178808.1 competence protein ComJ Regulator
  B34_RS16835 (B34_03408) nucA/comI 3188041..3188487 (-) 447 WP_003178810.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  B34_RS23820 - 3188787..3188957 (+) 171 WP_011197533.1 hypothetical protein -
  B34_RS16845 (B34_03409) - 3188963..3189766 (+) 804 WP_003178814.1 serine/threonine protein kinase -
  B34_RS16850 - 3189786..3191491 (-) 1706 Protein_3318 methyl-accepting chemotaxis protein -
  B34_RS16855 (B34_03412) - 3191607..3192347 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16224.12 Da        Isoelectric Point: 4.9954

>NTDB_id=174194 B34_RS16835 WP_003178810.1 3188041..3188487(-) (nucA/comI) [Bacillus licheniformis strain SCDB 34]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAD
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=174194 B34_RS16835 WP_003178810.1 3188041..3188487(-) (nucA/comI) [Bacillus licheniformis strain SCDB 34]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B5YEZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642

Multiple sequence alignment