Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BFL20_RS15780 Genome accession   NZ_CP018237
Coordinates   2775586..2777013 (+) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli strain 155     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2770586..2782013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFL20_RS15745 (BFL20_15540) yeeW 2770769..2770963 (+) 195 WP_000988600.1 DUF5983 family protein -
  BFL20_RS31915 (BFL20_15545) - 2771009..2771089 (+) 81 Protein_2814 hypothetical protein -
  BFL20_RS33140 (BFL20_15550) yoeF 2771404..2771760 (+) 357 WP_001303565.1 EutP/PduV family microcompartment system protein -
  BFL20_RS15760 (BFL20_15555) tmaR 2771861..2772190 (-) 330 WP_000450409.1 DUF496 family protein -
  BFL20_RS15765 (BFL20_15560) yeeA 2772362..2773420 (-) 1059 WP_001202488.1 FUSC family protein -
  BFL20_RS15770 (BFL20_15565) sbmC 2773619..2774092 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  BFL20_RS15775 (BFL20_15570) dacD 2774211..2775377 (-) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BFL20_RS15780 (BFL20_15575) sbcB 2775586..2777013 (+) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  BFL20_RS15785 (BFL20_15580) tsuB 2777056..2777283 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BFL20_RS15790 (BFL20_15585) tsuA 2777297..2778355 (-) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  BFL20_RS15795 (BFL20_15590) plaP 2778534..2779892 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BFL20_RS31920 yoeI 2779882..2779944 (-) 63 WP_010723108.1 membrane protein YoeI -
  BFL20_RS15800 (BFL20_15595) yeeY 2780159..2781088 (-) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  BFL20_RS15805 (BFL20_15600) yeeZ 2781134..2781958 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=174147 BFL20_RS15780 WP_000980540.1 2775586..2777013(+) (sbcB) [Escherichia coli strain 155]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=174147 BFL20_RS15780 WP_000980540.1 2775586..2777013(+) (sbcB) [Escherichia coli strain 155]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment