Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B34_RS00860 Genome accession   NZ_CP014793
Coordinates   173192..173971 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain SCDB 34     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 168192..178971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS00840 (B34_00171) trmFO 168889..170193 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B34_RS00845 (B34_00172) xerC 170260..171174 (+) 915 WP_003181750.1 tyrosine recombinase XerC -
  B34_RS00850 (B34_00173) hslV 171188..171733 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  B34_RS00855 (B34_00174) hslU 171750..173153 (+) 1404 WP_003181754.1 HslU--HslV peptidase ATPase subunit -
  B34_RS00860 (B34_00175) codY 173192..173971 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B34_RS00865 (B34_00177) flgB 174325..174714 (+) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  B34_RS00870 (B34_00178) flgC 174714..175166 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  B34_RS00875 (B34_00179) fliE 175180..175497 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  B34_RS00880 (B34_00180) fliF 175548..177149 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  B34_RS00885 (B34_00181) fliG 177163..178179 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  B34_RS00890 (B34_00182) fliH 178163..178930 (+) 768 WP_016885763.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=174146 B34_RS00860 WP_003181756.1 173192..173971(+) (codY) [Bacillus licheniformis strain SCDB 34]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=174146 B34_RS00860 WP_003181756.1 173192..173971(+) (codY) [Bacillus licheniformis strain SCDB 34]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment