Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   BSZ13_RS20540 Genome accession   NZ_CP018206
Coordinates   3944746..3945978 (+) Length   410 a.a.
NCBI ID   WP_001161840.1    Uniprot ID   -
Organism   Escherichia coli strain MRSN346647     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3939746..3950978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ13_RS20525 (BSZ13_20345) - 3940261..3941937 (+) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -
  BSZ13_RS20530 (BSZ13_20350) kdsB 3941947..3942687 (+) 741 WP_000030747.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BSZ13_RS20535 (BSZ13_20355) - 3942684..3944711 (+) 2028 WP_072617364.1 capsular polysaccharide biosynthesis protein -
  BSZ13_RS20540 (BSZ13_20360) kpsS 3944746..3945978 (+) 1233 WP_001161840.1 capsular biosynthesis protein Regulator
  BSZ13_RS20545 (BSZ13_20365) - 3946388..3947167 (+) 780 WP_072617405.1 ABC transporter permease -
  BSZ13_RS20550 (BSZ13_20370) - 3947164..3947853 (+) 690 WP_000619184.1 ABC transporter ATP-binding protein -
  BSZ13_RS20555 (BSZ13_20375) - 3948047..3950005 (+) 1959 WP_000838177.1 glycosyltransferase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48786.15 Da        Isoelectric Point: 9.9361

>NTDB_id=174091 BSZ13_RS20540 WP_001161840.1 3944746..3945978(+) (kpsS) [Escherichia coli strain MRSN346647]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENFKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGESQLHCDTIT
LETNSALNNK

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=174091 BSZ13_RS20540 WP_001161840.1 3944746..3945978(+) (kpsS) [Escherichia coli strain MRSN346647]
ATGCAAGGTAATGCTCTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTTAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGAGTCACAGTTACACTGCGACACTATTACA
TTAGAAACCAATTCTGCATTGAACAATAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

94.878

0.38

Multiple sequence alignment