Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BSZ13_RS18825 Genome accession   NZ_CP018206
Coordinates   3612494..3613009 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain MRSN346647     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3607494..3618009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ13_RS18800 (BSZ13_18635) ygaZ 3607893..3608630 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  BSZ13_RS18805 (BSZ13_18640) ygaH 3608620..3608955 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  BSZ13_RS18810 (BSZ13_18645) emrR 3609046..3609576 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BSZ13_RS18815 (BSZ13_18650) emrA 3609703..3610875 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BSZ13_RS18820 (BSZ13_18655) emrB 3610892..3612430 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BSZ13_RS18825 (BSZ13_18660) luxS 3612494..3613009 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BSZ13_RS18830 (BSZ13_18665) gshA 3613159..3614715 (-) 1557 WP_001551535.1 glutamate--cysteine ligase -
  BSZ13_RS18835 (BSZ13_18670) yqaA 3614788..3615216 (-) 429 WP_001287454.1 YqaA family protein -
  BSZ13_RS18840 (BSZ13_18675) yqaB 3615213..3615779 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BSZ13_RS18870 (BSZ13_18705) csrA 3617009..3617194 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=174084 BSZ13_RS18825 WP_001130211.1 3612494..3613009(-) (luxS) [Escherichia coli strain MRSN346647]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=174084 BSZ13_RS18825 WP_001130211.1 3612494..3613009(-) (luxS) [Escherichia coli strain MRSN346647]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731