Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BSZ13_RS14825 Genome accession   NZ_CP018206
Coordinates   2839546..2840973 (+) Length   475 a.a.
NCBI ID   WP_072617301.1    Uniprot ID   -
Organism   Escherichia coli strain MRSN346647     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2834546..2845973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ13_RS14790 (BSZ13_14655) yeeW 2834730..2834924 (+) 195 WP_000988600.1 DUF5983 family protein -
  BSZ13_RS27695 (BSZ13_14660) - 2834970..2835050 (+) 81 Protein_2667 hypothetical protein -
  BSZ13_RS27215 (BSZ13_14665) - 2835339..2835467 (-) 129 Protein_2668 transposase domain-containing protein -
  BSZ13_RS14800 (BSZ13_14670) - 2835539..2835721 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BSZ13_RS14805 (BSZ13_14675) tmaR 2835822..2836151 (-) 330 WP_000450409.1 DUF496 family protein -
  BSZ13_RS14810 (BSZ13_14680) yeeA 2836323..2837381 (-) 1059 WP_001200891.1 FUSC family protein -
  BSZ13_RS14815 (BSZ13_14685) sbmC 2837579..2838052 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  BSZ13_RS14820 (BSZ13_14690) dacD 2838171..2839337 (-) 1167 WP_042031746.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BSZ13_RS14825 (BSZ13_14695) sbcB 2839546..2840973 (+) 1428 WP_072617301.1 exodeoxyribonuclease I Machinery gene
  BSZ13_RS14830 (BSZ13_14700) tsuB 2841016..2841243 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BSZ13_RS14835 (BSZ13_14705) tsuA 2841257..2842315 (-) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  BSZ13_RS14840 (BSZ13_14710) plaP 2842494..2843852 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BSZ13_RS27700 yoeI 2843842..2843904 (-) 63 WP_010723108.1 membrane protein YoeI -
  BSZ13_RS14845 (BSZ13_14715) yeeY 2844119..2845048 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  BSZ13_RS14850 (BSZ13_14720) yeeZ 2845094..2845918 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=174074 BSZ13_RS14825 WP_072617301.1 2839546..2840973(+) (sbcB) [Escherichia coli strain MRSN346647]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYIFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=174074 BSZ13_RS14825 WP_072617301.1 2839546..2840973(+) (sbcB) [Escherichia coli strain MRSN346647]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATATCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCGCTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579