Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BSZ13_RS02205 Genome accession   NZ_CP018206
Coordinates   419108..419584 (+) Length   158 a.a.
NCBI ID   WP_001354275.1    Uniprot ID   -
Organism   Escherichia coli strain MRSN346647     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 414108..424584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ13_RS02175 (BSZ13_02170) - 414232..417078 (+) 2847 WP_072617191.1 Ag43/Cah family autotransporter adhesin -
  BSZ13_RS02180 (BSZ13_02175) - 417149..417344 (+) 196 Protein_375 DUF905 family protein -
  BSZ13_RS02190 (BSZ13_02185) - 417462..418280 (+) 819 WP_072617192.1 DUF932 domain-containing protein -
  BSZ13_RS28150 (BSZ13_02190) - 418280..418453 (+) 174 WP_001183321.1 hypothetical protein -
  BSZ13_RS02200 (BSZ13_02195) - 418619..419092 (+) 474 WP_001387789.1 antirestriction protein -
  BSZ13_RS02205 (BSZ13_02200) radC 419108..419584 (+) 477 WP_001354275.1 RadC family protein Machinery gene
  BSZ13_RS02210 (BSZ13_02205) - 419653..419874 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  BSZ13_RS02220 (BSZ13_02215) - 420037..420405 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BSZ13_RS02225 (BSZ13_02220) - 420495..420869 (+) 375 WP_000854765.1 TA system toxin CbtA family protein -
  BSZ13_RS28375 - 420866..420952 (+) 87 Protein_383 DUF5983 family protein -
  BSZ13_RS02230 (BSZ13_02225) istA 421146..422687 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  BSZ13_RS02235 (BSZ13_02230) istB 422702..423448 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  BSZ13_RS02240 (BSZ13_02235) - 423533..423943 (+) 411 Protein_386 DUF5983 family protein -
  BSZ13_RS02245 (BSZ13_02240) - 423960..424136 (+) 177 WP_001586605.1 DUF957 domain-containing protein -
  BSZ13_RS27915 - 424242..424391 (+) 150 Protein_388 hypothetical protein -
  BSZ13_RS28675 - 424361..424495 (+) 135 Protein_389 transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17668.26 Da        Isoelectric Point: 7.2517

>NTDB_id=174045 BSZ13_RS02205 WP_001354275.1 419108..419584(+) (radC) [Escherichia coli strain MRSN346647]
MQQLSFLPGNMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=174045 BSZ13_RS02205 WP_001354275.1 419108..419584(+) (radC) [Escherichia coli strain MRSN346647]
ATGCAGCAGCTTTCCTTTCTGCCCGGAAACATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392