Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   A1R12_RS10435 Genome accession   NZ_CP014783
Coordinates   2199975..2200583 (+) Length   202 a.a.
NCBI ID   WP_015417702.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2194975..2205583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS10395 (A1R12_10395) - 2196027..2196533 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  A1R12_RS10400 (A1R12_10400) - 2196672..2197085 (+) 414 WP_039254739.1 Hsp20/alpha crystallin family protein -
  A1R12_RS10405 (A1R12_10405) - 2197115..2197549 (-) 435 WP_007409493.1 YppG family protein -
  A1R12_RS10410 (A1R12_10410) - 2197736..2197918 (+) 183 WP_003153532.1 YppF family protein -
  A1R12_RS10415 (A1R12_10415) - 2197957..2198325 (-) 369 WP_007409492.1 YppE family protein -
  A1R12_RS10420 (A1R12_10420) - 2198371..2198616 (-) 246 WP_012117836.1 DUF5446 family protein -
  A1R12_RS10425 (A1R12_10425) sspM 2198823..2198927 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  A1R12_RS10430 (A1R12_10430) - 2198971..2199933 (-) 963 WP_015417701.1 DUF2515 domain-containing protein -
  A1R12_RS10435 (A1R12_10435) recU 2199975..2200583 (+) 609 WP_015417702.1 Holliday junction resolvase RecU Machinery gene
  A1R12_RS10440 (A1R12_10440) - 2200622..2203405 (+) 2784 WP_039254735.1 PBP1A family penicillin-binding protein -
  A1R12_RS10450 (A1R12_10450) - 2203563..2204713 (+) 1151 WP_094031235.1 IS3 family transposase -
  A1R12_RS10455 (A1R12_10455) - 2204771..2205262 (-) 492 WP_060674317.1 YpoC family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23675.77 Da        Isoelectric Point: 9.5779

>NTDB_id=173972 A1R12_RS10435 WP_015417702.1 2199975..2200583(+) (recU) [Bacillus amyloliquefaciens strain B15]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLHNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=173972 A1R12_RS10435 WP_015417702.1 2199975..2200583(+) (recU) [Bacillus amyloliquefaciens strain B15]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCATAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment