Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   A1R12_RS04115 Genome accession   NZ_CP014783
Coordinates   829947..830738 (+) Length   263 a.a.
NCBI ID   WP_012117114.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 824947..835738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS04095 (A1R12_04095) - 826941..827825 (+) 885 WP_039252294.1 PhzF family phenazine biosynthesis isomerase -
  A1R12_RS04100 (A1R12_04100) - 827902..828486 (+) 585 WP_015417058.1 nitroreductase -
  A1R12_RS04105 (A1R12_04105) - 828526..828717 (-) 192 WP_003155508.1 YfhD family protein -
  A1R12_RS19480 - 828788..828898 (-) 111 WP_003155504.1 YfhE family protein -
  A1R12_RS04110 (A1R12_04110) - 828956..829855 (-) 900 WP_033575004.1 TIGR01777 family oxidoreductase -
  A1R12_RS04115 (A1R12_04115) recX 829947..830738 (+) 792 WP_012117114.1 recombination regulator RecX Regulator
  A1R12_RS04120 (A1R12_04120) - 830745..831059 (+) 315 WP_007408553.1 YfhH family protein -
  A1R12_RS04125 (A1R12_04125) - 831204..832397 (+) 1194 WP_031378905.1 MFS transporter -
  A1R12_RS04130 (A1R12_04130) - 832437..832826 (-) 390 WP_061890502.1 DUF2606 family protein -
  A1R12_RS04135 (A1R12_04135) - 832789..833700 (-) 912 WP_015417062.1 trypsin-like serine peptidase -
  A1R12_RS04140 (A1R12_04140) - 833847..833999 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  A1R12_RS04145 (A1R12_04145) - 834123..834392 (+) 270 WP_003155492.1 YfhJ family protein -
  A1R12_RS04150 (A1R12_04150) - 834525..835052 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  A1R12_RS04155 (A1R12_04155) - 835138..835473 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31004.21 Da        Isoelectric Point: 6.0921

>NTDB_id=173948 A1R12_RS04115 WP_012117114.1 829947..830738(+) (recX) [Bacillus amyloliquefaciens strain B15]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=173948 A1R12_RS04115 WP_012117114.1 829947..830738(+) (recX) [Bacillus amyloliquefaciens strain B15]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTAAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment