Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   A1R12_RS01810 Genome accession   NZ_CP014783
Coordinates   340857..341294 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 335857..346294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS01785 (A1R12_01785) - 336878..338014 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  A1R12_RS01790 (A1R12_01790) - 338029..338463 (+) 435 WP_007409358.1 RDD family protein -
  A1R12_RS01795 (A1R12_01795) - 338535..338858 (+) 324 WP_060675310.1 YckD family protein -
  A1R12_RS01800 (A1R12_01800) - 338962..340383 (+) 1422 Protein_311 glycoside hydrolase family 1 protein -
  A1R12_RS01805 (A1R12_01805) nin/comJ 340438..340836 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  A1R12_RS01810 (A1R12_01810) nucA/comI 340857..341294 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  A1R12_RS01815 (A1R12_01815) hxlB 341652..342209 (-) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  A1R12_RS01820 (A1R12_01820) hxlA 342206..342841 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  A1R12_RS01825 (A1R12_01825) - 343073..343435 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=173943 A1R12_RS01810 WP_003156588.1 340857..341294(-) (nucA/comI) [Bacillus amyloliquefaciens strain B15]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=173943 A1R12_RS01810 WP_003156588.1 340857..341294(-) (nucA/comI) [Bacillus amyloliquefaciens strain B15]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCCCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment