Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BSO20_RS17410 Genome accession   NZ_CP018200
Coordinates   3526203..3526898 (+) Length   231 a.a.
NCBI ID   WP_007613229.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3521203..3531898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS17390 (BSO20_17400) - 3522125..3523111 (+) 987 WP_032873572.1 ABC transporter permease -
  BSO20_RS17395 (BSO20_17405) - 3523148..3524128 (+) 981 WP_032873574.1 ABC transporter permease ytrC -
  BSO20_RS17400 (BSO20_17410) - 3524144..3524839 (+) 696 WP_007408816.1 ABC transporter ATP-binding protein -
  BSO20_RS17405 (BSO20_17415) - 3524829..3526139 (+) 1311 WP_012118242.1 ABC transporter permease -
  BSO20_RS17410 (BSO20_17420) braR 3526203..3526898 (+) 696 WP_007613229.1 response regulator transcription factor Regulator
  BSO20_RS17415 (BSO20_17425) - 3526891..3527895 (+) 1005 WP_032873576.1 sensor histidine kinase -
  BSO20_RS17420 (BSO20_17430) - 3528001..3528753 (+) 753 WP_007613227.1 ABC transporter ATP-binding protein -
  BSO20_RS17425 (BSO20_17435) - 3528750..3530690 (+) 1941 WP_032873578.1 FtsX-like permease family protein -
  BSO20_RS17430 (BSO20_17440) - 3530798..3531517 (+) 720 WP_032873580.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26853.11 Da        Isoelectric Point: 7.1197

>NTDB_id=173930 BSO20_RS17410 WP_007613229.1 3526203..3526898(+) (braR) [Bacillus amyloliquefaciens strain WS-8]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFSEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLEQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=173930 BSO20_RS17410 WP_007613229.1 3526203..3526898(+) (braR) [Bacillus amyloliquefaciens strain WS-8]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCACGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAAGATTTCAGCCGGGTCATCCGGGAGTTTTCCGAAATCAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGTGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCATCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAGCTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGTCGGGAAGAACTCATCAGAAGCCTTTGGAATGATGAACGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGAACAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385