Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BSO20_RS12685 Genome accession   NZ_CP018200
Coordinates   2625145..2625834 (+) Length   229 a.a.
NCBI ID   WP_032875556.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2620145..2630834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS12660 (BSO20_12670) - 2620177..2620911 (-) 735 WP_223204429.1 ABC transporter permease -
  BSO20_RS12665 (BSO20_12675) - 2620928..2621686 (-) 759 WP_032875549.1 ABC transporter permease -
  BSO20_RS12670 (BSO20_12680) - 2621683..2622594 (-) 912 WP_007614842.1 ABC transporter ATP-binding protein -
  BSO20_RS12675 (BSO20_12685) - 2622837..2623559 (+) 723 WP_007614840.1 response regulator transcription factor -
  BSO20_RS12680 (BSO20_12690) - 2623556..2624995 (+) 1440 WP_032875552.1 sensor histidine kinase -
  BSO20_RS12685 (BSO20_12695) braR 2625145..2625834 (+) 690 WP_032875556.1 two-component system response regulator YxdJ Regulator
  BSO20_RS12690 (BSO20_12700) yxdK 2625831..2626808 (+) 978 WP_032875559.1 two-component system sensor histidine kinase YxdK -
  BSO20_RS12695 (BSO20_12705) yxdL 2626953..2627726 (+) 774 WP_032875562.1 ABC transporter ATP-binding protein YxdL -
  BSO20_RS12700 (BSO20_12710) yxdM 2627701..2629569 (+) 1869 WP_032875565.1 ABC transporter permease YxdM -
  BSO20_RS12705 (BSO20_12715) - 2629583..2629930 (+) 348 WP_004393256.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26575.29 Da        Isoelectric Point: 4.8564

>NTDB_id=173906 BSO20_RS12685 WP_032875556.1 2625145..2625834(+) (braR) [Bacillus amyloliquefaciens strain WS-8]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=173906 BSO20_RS12685 WP_032875556.1 2625145..2625834(+) (braR) [Bacillus amyloliquefaciens strain WS-8]
ATGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAAGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTAGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397

Multiple sequence alignment