Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BSO20_RS10780 Genome accession   NZ_CP018200
Coordinates   2272287..2272970 (-) Length   227 a.a.
NCBI ID   WP_007609089.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2267287..2277970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS10760 (BSO20_10765) - 2267432..2267716 (-) 285 WP_032872656.1 hypothetical protein -
  BSO20_RS10765 (BSO20_10770) - 2267768..2269696 (-) 1929 WP_032872654.1 FtsX-like permease family protein -
  BSO20_RS10770 (BSO20_10775) - 2269683..2270447 (-) 765 WP_007408973.1 ABC transporter ATP-binding protein -
  BSO20_RS10775 (BSO20_10780) - 2271268..2272290 (-) 1023 WP_032872652.1 sensor histidine kinase -
  BSO20_RS10780 (BSO20_10785) braR 2272287..2272970 (-) 684 WP_007609089.1 response regulator transcription factor Regulator
  BSO20_RS20045 (BSO20_10790) - 2273231..2273492 (+) 262 Protein_2114 hypothetical protein -
  BSO20_RS10785 (BSO20_10795) - 2273610..2274263 (-) 654 WP_032872650.1 ABC-2 transporter permease -
  BSO20_RS10790 (BSO20_10800) - 2274241..2275113 (-) 873 WP_029326108.1 ABC transporter ATP-binding protein -
  BSO20_RS10795 (BSO20_10805) glmS 2275495..2277297 (-) 1803 WP_032872648.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26478.49 Da        Isoelectric Point: 4.8517

>NTDB_id=173889 BSO20_RS10780 WP_007609089.1 2272287..2272970(-) (braR) [Bacillus amyloliquefaciens strain WS-8]
MDNIYKLLIIEDDKDMAKALQNLLVKWNFETVICGDFDNILSIYEKEEPHIILLDINIPSFDGFYWCKKIREVSSVPIIF
CSSRNSNMDIVMAINNGGDDYIQKPFDSHVLVAKLQAIIRRTYEYITAESHLIESNNVILNLNDAKIYFQDQSLELTKNE
FKILKTLMENKGKVVSRDNLMRQLWNDDIYVNENTLTVNINRLRNRLEGINVDDFILTKKGMGYIIQ

Nucleotide


Download         Length: 684 bp        

>NTDB_id=173889 BSO20_RS10780 WP_007609089.1 2272287..2272970(-) (braR) [Bacillus amyloliquefaciens strain WS-8]
TTGGATAATATATATAAATTGCTGATTATAGAAGACGATAAGGATATGGCTAAGGCGTTACAAAATTTACTTGTTAAATG
GAATTTTGAAACTGTTATATGCGGAGATTTTGATAATATTTTGTCAATATATGAAAAAGAAGAGCCTCACATCATATTAT
TGGACATCAATATTCCTTCATTTGATGGTTTTTATTGGTGTAAGAAAATAAGAGAAGTTTCAAGTGTCCCAATTATTTTT
TGCTCGTCTAGAAACAGTAATATGGATATTGTCATGGCTATTAACAATGGCGGGGATGATTATATTCAAAAACCATTTGA
CAGCCATGTATTGGTGGCGAAATTACAAGCAATTATAAGGAGAACTTATGAGTACATAACAGCAGAATCTCATCTAATCG
AATCTAATAATGTGATATTAAACCTTAACGATGCAAAAATATACTTCCAAGATCAGAGTTTAGAGCTTACAAAGAATGAA
TTTAAAATTCTAAAAACGTTAATGGAAAACAAAGGGAAAGTTGTTTCGCGGGATAATTTAATGAGACAGCTTTGGAATGA
TGATATTTACGTAAACGAAAATACGTTGACAGTAAATATAAATAGATTAAGGAATAGATTAGAGGGGATTAATGTTGATG
ACTTTATTTTAACAAAAAAAGGAATGGGATATATAATTCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.119

96.476

0.445