Detailed information NTG0173887

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BSO20_RS10375
• Genome accession: NZ_CP018200
• Coordinates: 2195596..2196717 (-)
• Length: 373 a.a.
• NCBI ID: WP_032872747.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WS-8
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2190596..2201717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSO20_RS10355 (BSO20_10360)	-	2191043..2191738 (-)	696	WP_021495283.1	metal ABC transporter ATP-binding protein	-
BSO20_RS10360 (BSO20_10365)	-	2191793..2192752 (-)	960	WP_032872825.1	metal ABC transporter substrate-binding protein	-
BSO20_RS10365 (BSO20_10370)	-	2192937..2194616 (-)	1680	WP_032872751.1	glycoside hydrolase family 13 protein	-
BSO20_RS10370 (BSO20_10375)	-	2194700..2195479 (-)	780	WP_032872749.1	glucose 1-dehydrogenase	-
BSO20_RS10375 (BSO20_10380)	rapF	2195596..2196717 (-)	1122	WP_032872747.1	tetratricopeptide repeat protein	Regulator
BSO20_RS10380 (BSO20_10385)	-	2196827..2197330 (+)	504	WP_032872745.1	M15 family metallopeptidase	-
BSO20_RS10385 (BSO20_10390)	-	2197327..2198685 (-)	1359	WP_032872743.1	YcdB/YcdC domain-containing protein	-
BSO20_RS10390 (BSO20_10395)	-	2198886..2200286 (-)	1401	WP_032872741.1	YcdB/YcdC domain-containing protein	-
BSO20_RS10395 (BSO20_10400)	-	2200413..2201408 (+)	996	WP_032872739.1	DUF5105 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44319.55 Da
• Isoelectric Point: 5.1691

>NTDB_id=173887 BSO20_RS10375 WP_032872747.1 2195596..2196717(-) (rapF) [Bacillus amyloliquefaciens strain WS-8]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDVLESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=173887 BSO20_RS10375 WP_032872747.1 2195596..2196717(-) (rapF) [Bacillus amyloliquefaciens strain WS-8]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACACA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCTGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACGTTCTGGAATCAAAAGAGCTGTTGGCTGACACGGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402