Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB684_RS13320 Genome accession   NZ_CP014781
Coordinates   2585564..2586364 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis strain HRBL-15TDI7     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2580564..2591364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB684_RS13295 (AB684_13295) - 2581370..2581990 (-) 621 WP_003183353.1 N-acetylmuramoyl-L-alanine amidase family protein -
  AB684_RS13300 (AB684_13300) - 2582026..2582487 (-) 462 WP_016885940.1 hypothetical protein -
  AB684_RS13305 (AB684_13305) - 2582620..2584050 (-) 1431 WP_016886315.1 IS1182 family transposase -
  AB684_RS13310 (AB684_13310) - 2584381..2584767 (-) 387 WP_009327922.1 serine O-acetyltransferase -
  AB684_RS13315 (AB684_13315) - 2584895..2585191 (-) 297 WP_003183359.1 antimicrobial peptide LCI -
  AB684_RS13320 (AB684_13320) spo0A 2585564..2586364 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  AB684_RS13325 (AB684_13325) spoIVB 2586654..2587970 (-) 1317 WP_044051837.1 SpoIVB peptidase -
  AB684_RS13330 (AB684_13330) recN 2588120..2589850 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  AB684_RS13335 (AB684_13335) ahrC 2589882..2590331 (-) 450 WP_003183369.1 transcriptional regulator AhrC/ArgR -
  AB684_RS13340 (AB684_13340) - 2590497..2591342 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=173877 AB684_RS13320 WP_003183361.1 2585564..2586364(-) (spo0A) [Bacillus licheniformis strain HRBL-15TDI7]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=173877 AB684_RS13320 WP_003183361.1 2585564..2586364(-) (spo0A) [Bacillus licheniformis strain HRBL-15TDI7]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925

Multiple sequence alignment