Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BSO20_RS09690 Genome accession   NZ_CP018200
Coordinates   2035529..2035963 (-) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2030529..2040963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS09675 (BSO20_09680) - 2031131..2031979 (-) 849 WP_032872939.1 diguanylate cyclase domain-containing protein -
  BSO20_RS09680 (BSO20_09685) - 2031960..2033045 (-) 1086 WP_032872937.1 hypothetical protein -
  BSO20_RS09685 (BSO20_09690) - 2033279..2035465 (-) 2187 WP_029326219.1 DNA topoisomerase III -
  BSO20_RS09690 (BSO20_09695) lrpC 2035529..2035963 (-) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  BSO20_RS09695 (BSO20_09700) - 2036139..2036429 (+) 291 WP_003156265.1 DUF3817 domain-containing protein -
  BSO20_RS09700 (BSO20_09705) - 2036467..2037276 (-) 810 WP_032872935.1 lipid II flippase Amj family protein -
  BSO20_RS09705 (BSO20_09710) - 2037775..2038197 (-) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  BSO20_RS09710 (BSO20_09715) - 2038204..2038827 (-) 624 WP_032872933.1 GNAT family N-acetyltransferase -
  BSO20_RS09715 (BSO20_09720) - 2038915..2039418 (-) 504 WP_032872931.1 D-lyxose/D-mannose family sugar isomerase -
  BSO20_RS09720 (BSO20_09725) - 2039431..2040291 (-) 861 WP_023356711.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=173876 BSO20_RS09690 WP_003156263.1 2035529..2035963(-) (lrpC) [Bacillus amyloliquefaciens strain WS-8]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=173876 BSO20_RS09690 WP_003156263.1 2035529..2035963(-) (lrpC) [Bacillus amyloliquefaciens strain WS-8]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCTTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTCTCCTGCATTGTTGAAGCGACAGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGCTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799

Multiple sequence alignment