Detailed information NTG0173875

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BSO20_RS09620
• Genome accession: NZ_CP018200
• Coordinates: 2017939..2019069 (-)
• Length: 376 a.a.
• NCBI ID: WP_032872953.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WS-8
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2012939..2024069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSO20_RS09590 (BSO20_09595)	-	2013697..2014974 (+)	1278	WP_087920751.1	Nramp family divalent metal transporter	-
BSO20_RS09595 (BSO20_09600)	-	2015080..2015346 (+)	267	WP_007609521.1	hypothetical protein	-
BSO20_RS19815	-	2015570..2016148 (+)	579	WP_171006740.1	hypothetical protein	-
BSO20_RS09605 (BSO20_09610)	-	2016244..2016801 (+)	558	WP_032872960.1	hypothetical protein	-
BSO20_RS20010 (BSO20_09620)	-	2017182..2017412 (+)	231	WP_032872955.1	hypothetical protein	-
BSO20_RS20130	-	2017805..2017939 (-)	135	WP_255322095.1	hypothetical protein	-
BSO20_RS09620 (BSO20_09625)	rapC	2017939..2019069 (-)	1131	WP_032872953.1	Rap family tetratricopeptide repeat protein	Regulator
BSO20_RS09630 (BSO20_09635)	-	2019733..2020182 (+)	450	WP_049589365.1	hypothetical protein	-
BSO20_RS09635 (BSO20_09640)	-	2020246..2020803 (+)	558	WP_032872951.1	hypothetical protein	-
BSO20_RS20270	-	2020839..2021099 (-)	261	Protein_1888	peptidoglycan-binding domain-containing protein	-
BSO20_RS09645 (BSO20_09650)	-	2021513..2023234 (-)	1722	WP_014304370.1	pyruvate oxidase	-
BSO20_RS09650 (BSO20_09655)	-	2023292..2023736 (-)	445	Protein_1890	NUDIX hydrolase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44582.00 Da
• Isoelectric Point: 5.5572

>NTDB_id=173875 BSO20_RS09620 WP_032872953.1 2017939..2019069(-) (rapC) [Bacillus amyloliquefaciens strain WS-8]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETAVK
QSLGYLEGKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=173875 BSO20_RS09620 WP_032872953.1 2017939..2019069(-) (rapC) [Bacillus amyloliquefaciens strain WS-8]
ATGGATCAAGTTTTGCCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTCTAAATCGTGCTCGGA
CTTCTAATGAAGAAGAATATTTGGCTAAATTAAAAATCATTAATTCATTATACGAAGAATATAATGAAACAGCAGTGAAA
CAAAGCTTAGGCTACTTAGAAGGGAAACGCCTTTGGTCTGATTTCGCAGAGCTGACTGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACACGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (145-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	99.202	0.372