Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   BSR20_RS08760 Genome accession   NZ_CP018189
Coordinates   1898196..1901849 (-) Length   1217 a.a.
NCBI ID   WP_156209954.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1893196..1906849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS08740 (BSR20_08840) proB 1893586..1894389 (-) 804 WP_156209953.1 glutamate 5-kinase -
  BSR20_RS08745 (BSR20_08845) - 1894509..1896098 (-) 1590 WP_045769183.1 hypothetical protein -
  BSR20_RS08750 (BSR20_08850) - 1896101..1896832 (-) 732 WP_045772452.1 ABC transporter ATP-binding protein -
  BSR20_RS08755 (BSR20_08855) - 1897110..1897841 (+) 732 WP_013991143.1 DUF554 domain-containing protein -
  BSR20_RS08760 (BSR20_08860) rexA 1898196..1901849 (-) 3654 WP_156209954.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  BSR20_RS08765 (BSR20_08865) rexB 1901839..1905159 (-) 3321 WP_156209998.1 ATP-dependent nuclease subunit B Machinery gene
  BSR20_RS08770 (BSR20_08870) - 1905408..1906781 (-) 1374 WP_045772455.1 GHKL domain-containing protein -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138110.19 Da        Isoelectric Point: 4.7595

>NTDB_id=173773 BSR20_RS08760 WP_156209954.1 1898196..1901849(-) (rexA) [Streptococcus salivarius strain ICDC3]
MLTKAFLNPTEIKERIAQEAASDKERKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYSFSQATAGPEKWLRQNLLKGQAEANPDKAKAELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILED
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKEPHPENETEVLIYNSDEASVTPDEESADQPISSGE
ISLVIKEIIKLHKQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKGQFYDKLLAAHTKSGLHPEVVTQGLEAKLTLFTKTLADWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRSEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPQNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGIGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEDLTPEAI
GQVEVQAAVDADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETTTSFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTQHGELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGQDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=173773 BSR20_RS08760 WP_156209954.1 1898196..1901849(-) (rexA) [Streptococcus salivarius strain ICDC3]
ATGTTGACTAAAGCTTTTTTGAATCCAACAGAGATTAAGGAACGCATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAGGCCATTTACAGTAATGGTACTAATATTCTTGTGTCAGCTTCGGCTGGATCAGGAAAAA
CCTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGCATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCCGCGGGTGAGTTAAAAGAGCGTCTGGAAAAGCGTCTGACAGAGCAGCTTGGACAAGTTGAGACGGATGAAGA
GCGTGCCTTTCTTTCAGATCAGATTGCCAAGATTGGGACGGCAGATATTGGAACTATGGATGCCTTCACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGTGTGTCACCTATTTTCCGCATTATGACAGACCCTGCCGAGCAGACACTTATGAAA
AATGAGGTTTATGCCGATCTTTTCAACGATTATATGCAAGGGAAGGATGCCCAACTTTTCCAAAAATTGGTCCGTAACTT
TGCTGGAAATGGCAAGACTAGTAAGGCCTTTCGTGATTTAGTTTACGATGTCTATAGCTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAAAATCTTTTAAAAGGGCAGGCAGAGGCCAATCCAGACAAGGCTAAAGCTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCCTTCTTAAGAGACCATCTAGGCCTAGCTCAGCGTGAATTTGCCAA
GGCTAAGTATCTTAATAATGTGTCGGATGCCATTAGCCTTCTTGAAGGAGCCTTGGCCAATGACCAAACGGATATGGAGG
ACTTGCTCAAACAACTCTTGACTTTGTCAGGAGGTACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCTCAGTTGCGAGAGGTTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTAGAGCTGCTTCAGGCCTTTGTACTTGATTTTTCGGACC
AGTATTTACAGGCAAAGATTCAGGAAAATGCTTTTGAATTCTCGGATATTGCCCATTTTGCCATCCGTATTTTGGAGGAT
AATCCAGAGGTGGCAGCTAGCTACCGTGACCGTTACCATGAAGTGATGGTAGATGAGTATCAGGACAATAGCCATACCCA
AGAACGCATGTTGGAACTCCTATCTAACGGCCACAATCGATTCATGGTGGGAGATATCAAACAATCCATCTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAATGGCAAGTTCCAGCTCTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTA
AAAGAGAATTTTCGTAGTCAATCTGAAGTTCTTGATGCGACTAATGGTGTTTTCAGCCACCTCATGGACCAGGAAATCGG
AGATATCCTCTATGACAAGACGCATATGTTGGTAGCAGGTAGCGAGAAGCAAAAAGAACCCCATCCTGAAAATGAGACAG
AGGTTCTGATTTACAATAGTGATGAAGCAAGTGTGACTCCTGATGAGGAAAGTGCTGATCAACCTATTAGTAGCGGCGAG
ATTTCCTTGGTTATCAAAGAAATCATCAAACTTCATAAGCAAGGTGTACGTTTTGAGGATATTACCCTCCTAGCACCAAC
TCGCAACACCTATCTGGACTTGATGGCAAGCTTTGAGGAGCACGGAATTCCCTTGGTACCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGACACCCTTCGTGCCATCAATAATCCTCTCAATGACTATGCCTTGGTT
GCCCTCCTTCGTTCACCTATGTTTAACTTTAACGAGGACGACCTGGCTCGGATCGCTGTCCAGGCTGACAAAGGACAATT
CTATGACAAGCTTCTTGCAGCTCATACTAAATCAGGACTTCATCCAGAAGTCGTGACGCAAGGACTTGAGGCAAAGTTGA
CTCTTTTCACTAAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTATGACCTCATCTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGATCTGAGCAACGCCAGGCCAATCTCTATGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACTGGCTTTAAGGGACTTTCTCGTTTTATTGGTATGATTGATAAGATCATTTCTAGCG
GTAACGACCTAGAGGAAGTAACAGACTTGGTTCCCCAAAATGCCGTTAGCCTTATGACCATTCACAAGTCCAAGGGGCTA
GAGTTTAAGTATGTCTTTGTCTTGCAGATGAATCGCAAATTCATTGGTCACAGCAAGGATGGCTTAAGTGGTAAGTACAT
TATCAACCGTGAAAAAGGAATTGGCATTAAGTATCTAGCTGACCTCAAAGACCAGATAAACACCAATTTGCCTAAGTTAA
ATGTTGTTCTCGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAACGCCGAGCAAGTATCTCAGAAGAGATGCGTCTG
CTCTATGTTGCAATGACCCGTGCAGAGAAAAAACTCTACCTAGTTGGTAAGGGCAGTAAGGAAAAATTGACCCAGCAATT
TGGCACAGATGTTGAAAATAATCGCCTACCAGTAGCTCTACGTGACCAAATTGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACTGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGACTTGACCCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCGGCAGTAGATGCTGATGATCTCTCTAACAATCGCCAGACGGAAGACATTAAGCGTGCCCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAACCAGCTTTATGCACCGGCGATTGACCTGCCATCTGTGCGTACGCCCAGCC
AGCTCAAAGCCTTCTACGAACCTGTCATGGATACCGAAGGGGTGGATATTATGGACAAGAAAGAGGAAGTGCAACCTCTT
GAGACTACCACTAGCTTTGAGCTTCCAGACTTTGGGCAAAAAACGAAGGTTACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGACAAGGTGACCCTCCAAGATTTAACACAGGCCTTGAGTCGGGTATCGGCAG
ATGATCAAGTCAAGGCGCGCGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AACCGTGATAAGTTGCGCCGCGAAGCGCCATTTGCCATGTTGGCAGAAGATCCCGCCAGTAAAGAAGACTTTGTCGTCCG
TGGTATTATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACGGACCGCTTCACTCAACATG
GTGAGCTTAAGGAACGCTACAAAGGGCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGACAAGACTTGGAAGTCGTAGAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.612

100

0.509